Gene annotation
Transcriptome id Sobic.001G177800.1
Synonym RPL10C, SAG24, Sb01g015470
Functional annotation ribosomal protein, putative, expressed
UniProt C5WTC9
Pfam PF00252
Panther DB PTHR11726 PTHR11726:SF15
NCBI CDD KOG0857; 60s ribosomal protein L10
KEGG Orthology K02866; RP-L10e, large subunit ribosomal protein L10e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G66580 : senescence associated gene 24
RAP-DB (Rice) LOC_Os05g07700.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a017348 , Zm00025a007151
Brachypodium KQK07306 , KQJ88920
Barley HORVU1Hr1G024710.3 , HORVU1Hr1G024710.1 , HORVU1Hr1G024710.2 , HORVU1Hr1G024710.5 , HORVU1Hr1G024710.4
Wheat TraesCS1B02G132700 , TraesCS4B02G108400 , TraesCS4A02G204800 , TraesCS4D02G105600 , TraesCS1A02G112500 , TraesCS1D02G114100
Populus PNT08589 , PNT08584 , PNT08590


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cDNA sequences
Sobic.001G177800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
2 Sobic.009G139400 expressed protein -
3 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
7 Sobic.004G189400 expressed protein -
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
10 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.001G400800 pathogenesis-related Bet v I family protein, putative, expressed -
12 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
13 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
14 Sobic.001G423800 DNA binding protein, putative, expressed -
15 Sobic.001G187200 expressed protein -
16 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
17 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
18 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
19 Sobic.001G070800 expressed protein -
20 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2


Gene co-expression network
sample Sobic001G177800 Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic001G493001 Sobic001G493001 Sobic007G184600--Sobic001G493001 Sobic007G184600--Sobic001G177800 Sobic006G067800 Sobic006G067800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic009G077800 Sobic009G077800 Sobic009G139400--Sobic009G077800 Sobic003G297600 Sobic003G297600 Sobic009G139400--Sobic003G297600 Sobic001G119400 Sobic001G119400 Sobic009G139400--Sobic001G119400 Sobic009G139400--Sobic001G177800 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic005G029200 Sobic005G029200 Sobic009G139400--Sobic005G029200 Sobic002G175100 Sobic002G175100 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic006G047400 Sobic006G047400 Sobic001G374700--Sobic006G047400 Sobic009G215200 Sobic009G215200 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic007G197800 Sobic007G197800 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic007G227300--Sobic006G099900 Sobic003G200700 Sobic003G200700 Sobic007G227300--Sobic003G200700 Sobic001G400800 Sobic001G400800 Sobic007G227300--Sobic001G400800 Sobic003G252800 Sobic003G252800 Sobic007G227300--Sobic003G252800 Sobic006G268800 Sobic006G268800 Sobic007G227300--Sobic006G268800 Sobic006G277600 Sobic006G277600 Sobic007G227300--Sobic006G277600 Sobic004G148200 Sobic004G148200 Sobic007G227300--Sobic004G148200 Sobic009G240600 Sobic009G240600 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic001G018900 Sobic001G018900 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic002G140400 Sobic002G140400 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic008G050600 Sobic008G050600 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic008G136400 Sobic008G136400 Sobic004G189400--Sobic008G136400 Sobic004G189400--Sobic005G029200 Sobic006G099900--Sobic007G227300 Sobic006G099900--Sobic003G252800 Sobic001G317200 Sobic001G317200 Sobic006G099900--Sobic001G317200 Sobic003G286600 Sobic003G286600 Sobic006G099900--Sobic003G286600 Sobic010G084400 Sobic010G084400 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic006G099900--Sobic005G091500 Sobic006G099900--Sobic006G277600 Sobic010G009300--Sobic001G177800 Sobic010G009300--Sobic007G184600 Sobic010G009300--Sobic009G139400 Sobic002G187500 Sobic002G187500 Sobic010G009300--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic010G009300--Sobic002G190900 Sobic001G252300 Sobic001G252300 Sobic010G009300--Sobic001G252300 Sobic010G009300--Sobic009G077800 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700
Octagon: transcription factors


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