Gene annotation
Transcriptome id Sobic.003G322400.1
Synonym Sb03g036900
Functional annotation 40S ribosomal protein S25, putative, expressed
UniProt C5XMD2
Pfam PF03297
Panther DB PTHR12850
NCBI CDD KOG1767; 40S ribosomal protein S25
KEGG Orthology K02975; RP-S25e, small subunit ribosomal protein S25e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39200 : Ribosomal protein S25 family protein
RAP-DB (Rice) LOC_Os08g44480.1 : 40S ribosomal protein S25, putative, expressed
MaizeGDB (Corn) Zm00025a005600 , Zm00025a001729 , Zm00025a027231 , Zm00025a039866
Brachypodium KQJ91597 , KQK02321
Barley HORVU4Hr1G001220.3 , HORVU4Hr1G001220.4 , HORVU4Hr1G001220.6
Wheat TraesCS4B02G008900 , TraesCS4A02G307100 , TraesCS4A02G307100 , TraesCS7D02G487600 , TraesCS7B02G407300
Populus -


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cDNA sequences
Sobic.003G322400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
3 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
4 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
5 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
6 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
7 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
8 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
9 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
10 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
11 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
12 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
13 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
14 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
15 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
17 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
18 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
19 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
20 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e


Gene co-expression network
sample Sobic003G322400 Sobic003G322400 Sobic009G050300 Sobic009G050300 Sobic003G322400--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G408100 Sobic003G408100 Sobic003G322400--Sobic003G408100 Sobic001G374700 Sobic001G374700 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic007G212600--Sobic001G374700 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic003G321700 Sobic003G321700 Sobic007G212600--Sobic003G321700 Sobic007G212600--Sobic004G104100 Sobic010G260100 Sobic010G260100 Sobic007G212600--Sobic010G260100 Sobic007G212600--Sobic009G050300 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic001G054900--Sobic003G408100 Sobic010G206200 Sobic010G206200 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic003G408100--Sobic001G018900 Sobic003G408100--Sobic009G163800 Sobic003G408100--Sobic006G116700 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic006G047400 Sobic006G047400 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic006G067800 Sobic006G067800 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic007G184600--Sobic002G081600 Sobic007G184600--Sobic001G493001 Sobic001G177800 Sobic001G177800 Sobic007G184600--Sobic001G177800 Sobic007G184600--Sobic006G067800 Sobic007G184600--Sobic003G322400 Sobic007G184600--Sobic003G346600
Octagon: transcription factors


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