Gene annotation
Transcriptome id Sobic.003G346600.1
Synonym Sb03g039010
Functional annotation 40S ribosomal protein S23, putative, expressed
UniProt -
Pfam PF00164
Panther DB PTHR11652 PTHR11652:SF16
NCBI CDD KOG1749; 40S ribosomal protein S23
KEGG Orthology K02973; RP-S23e, small subunit ribosomal protein S23e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G02960 : Ribosomal protein S12/S23 family protein
RAP-DB (Rice) LOC_Os03g60400.1 : 40S ribosomal protein S23, putative, expressed
MaizeGDB (Corn) Zm00025a037733 , Zm00025a016445 , Zm00025a053108 , Zm00025a043922 , Zm00025a026970 , Zm00025a008786
Brachypodium KQK05846 , KQK10459
Barley HORVU5Hr1G112390.4 , HORVU3Hr1G087380.4 , HORVU3Hr1G087380.3 , HORVU3Hr1G087380.2 , HORVU6Hr1G043260.1 , HORVU6Hr1G043260.2 , HORVU1Hr1G071570.3 , HORVU3Hr1G087380.1 , HORVU1Hr1G071570.1 , HORVU5Hr1G112390.3 , HORVU5Hr1G112390.2 , HORVU5Hr1G112390.1 , HORVU5Hr1G066080.4 , HORVU5Hr1G066080.1
Wheat TraesCS1D02G287800 , TraesCS3B02G385700 , TraesCS1A02G288800 , TraesCS5A02G473700 , TraesCS5B02G486700 , TraesCS3A02G353000 , TraesCS5D02G486500 , TraesCS3D02G347100
Populus -


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cDNA sequences
Sobic.003G346600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
2 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
3 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
4 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
5 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
6 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
7 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
9 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
10 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
11 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
12 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
13 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
14 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
15 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
17 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
18 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
19 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
20 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e


Gene co-expression network
sample Sobic003G346600 Sobic003G346600 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic009G050300 Sobic009G050300 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic004G008400 Sobic004G008400 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic010G060500--Sobic003G346600 Sobic010G060500--Sobic006G137100 Sobic010G060500--Sobic004G008400 Sobic010G060500--Sobic009G166500 Sobic010G060500--Sobic009G050300 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic010G060500--Sobic009G163800 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic006G137100--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600
Octagon: transcription factors


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