Gene annotation
Transcriptome id Sobic.010G060500.1,Sobic.010G060500.2
Synonym RPL23AA, RPL23A, ATRPL23A
Functional annotation 60S ribosomal protein L23A, putative, expressed
UniProt A0A194YHL5
Pfam PF00276 PF03939
Panther DB PTHR11620 PTHR11620:SF14
NCBI CDD KOG1751; 60s ribosomal protein L23
KEGG Orthology K02893; RP-L23Ae, large subunit ribosomal protein L23Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G55280 : ribosomal protein L23AB
RAP-DB (Rice) LOC_Os01g24690.1 : 60S ribosomal protein L23A, putative, expressed
MaizeGDB (Corn) Zm00025a056406 , Zm00025a010789 , Zm00025a042867
Brachypodium KQJ83398 , KQJ83397 , KQK12825 , KQK12826
Barley HORVU2Hr1G086360.3 , HORVU2Hr1G086360.2 , HORVU2Hr1G086360.1 , HORVU2Hr1G086360.4
Wheat TraesCS2B02G375100
Populus -


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cDNA sequences
Sobic.010G060500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
2 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
4 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
5 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
6 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
7 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
8 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
9 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
10 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
11 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
12 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
13 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
14 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
17 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
18 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
19 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
20 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e


Gene co-expression network
sample Sobic010G060500 Sobic010G060500 Sobic003G346600 Sobic003G346600 Sobic010G060500--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic010G060500--Sobic006G137100 Sobic004G008400 Sobic004G008400 Sobic010G060500--Sobic004G008400 Sobic009G166500 Sobic009G166500 Sobic010G060500--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic010G060500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic009G163800 Sobic009G163800 Sobic010G060500--Sobic009G163800 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic006G137100--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic002G379500 Sobic002G379500 Sobic004G008400--Sobic002G379500 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic002G255300--Sobic004G008400 Sobic002G255300--Sobic009G163800 Sobic002G255300--Sobic003G346600 Sobic009G076400 Sobic009G076400 Sobic002G255300--Sobic009G076400 Sobic002G255300--Sobic007G178600 Sobic004G331400 Sobic004G331400 Sobic002G255300--Sobic004G331400 Sobic002G255300--Sobic010G060500 Sobic002G255300--Sobic007G197800 Sobic002G255300--Sobic009G050300 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic007G019400 Sobic007G019400 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801
Octagon: transcription factors


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