Gene annotation
Transcriptome id Sobic.003G387900.1
Synonym RPL5B, Sb03g042604, OLI7
Functional annotation ribosomal L18p/L5e family protein, putative, expressed
UniProt A0A1B6Q7J3
Pfam PF14204 PF00861
Panther DB PTHR23410
NCBI CDD KOG0875; 60S ribosomal protein L5
KEGG Orthology K02932; RP-L5e, large subunit ribosomal protein L5e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:00080975S rRNA binding


Orthologs (automatic annotation)
TAIR AT5G39740 : ribosomal protein L5 B
RAP-DB (Rice) LOC_Os01g67134.1 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039452 , Zm00025a026443 , Zm00025a000440
Brachypodium KQJ87806
Barley HORVU5Hr1G040070.2 , HORVU5Hr1G040070.1 , HORVU5Hr1G092630.6 , HORVU5Hr1G092630.5 , HORVU5Hr1G092630.4 , HORVU5Hr1G092630.3 , HORVU5Hr1G092630.2 , HORVU5Hr1G092630.1
Wheat TraesCS2B02G312400 , TraesCS2B02G312400 , TraesCS5A02G372700 , TraesCS5A02G372700
Populus -


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cDNA sequences
Sobic.003G387900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
2 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
3 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
4 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
6 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
8 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
9 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
11 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
12 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
13 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
14 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
15 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
16 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
18 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
19 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
20 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae


Gene co-expression network
sample Sobic003G387900 Sobic003G387900 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic003G387900--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic009G050300 Sobic009G050300 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic004G008400 Sobic004G008400 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic009G076400--Sobic007G053300 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic010G069400--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic010G069400--Sobic005G050500 Sobic002G304900 Sobic002G304900 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600
Octagon: transcription factors


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