Gene annotation
Transcriptome id Sobic.007G053300.1
Synonym Sb07g004290
Functional annotation 40S ribosomal protein S3-1, putative, expressed
UniProt C5YHF8 , H0I4F4
Pfam PF07650 PF00189
Panther DB PTHR11760 PTHR11760:SF20
NCBI CDD KOG3181; 40S ribosomal protein S3
KEGG Orthology K02985; RP-S3e, small subunit ribosomal protein S3e
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G35530 : Ribosomal protein S3 family protein
RAP-DB (Rice) LOC_Os03g38000.1 : 40S ribosomal protein S3-1, putative, expressed
MaizeGDB (Corn) Zm00025a055077 , Zm00025a030044
Brachypodium KQJ95269
Barley HORVU7Hr1G067280.1 , HORVU5Hr1G034770.2 , HORVU5Hr1G034770.1
Wheat TraesCS3A02G107800 , TraesCS7B02G198400 , TraesCS7D02G291300
Populus -


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cDNA sequences
Sobic.007G053300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
2 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
3 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
4 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
7 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
8 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
9 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
10 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
11 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
12 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
13 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
14 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
17 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
18 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
20 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13


Gene co-expression network
sample Sobic007G053300 Sobic007G053300 Sobic006G213000 Sobic006G213000 Sobic007G053300--Sobic006G213000 Sobic009G076400 Sobic009G076400 Sobic007G053300--Sobic009G076400 Sobic006G137100 Sobic006G137100 Sobic007G053300--Sobic006G137100 Sobic007G019400 Sobic007G019400 Sobic007G053300--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic007G053300--Sobic003G249700 Sobic001G226500 Sobic001G226500 Sobic007G053300--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic007G053300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic007G053300--Sobic004G198400 Sobic002G379500 Sobic002G379500 Sobic007G053300--Sobic002G379500 Sobic006G213000--Sobic006G137100 Sobic006G213000--Sobic007G053300 Sobic006G213000--Sobic009G076400 Sobic003G387900 Sobic003G387900 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic002G056200 Sobic002G056200 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic009G076400--Sobic007G053300 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic004G008400 Sobic004G008400 Sobic009G076400--Sobic004G008400 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic009G050300 Sobic009G050300 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic001G226500--Sobic003G249700 Sobic001G226500--Sobic007G019400 Sobic001G226500--Sobic009G076400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic001G226500--Sobic007G053300 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic009G054800 Sobic009G054800 Sobic001G226500--Sobic009G054800 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic007G197800 Sobic007G197800 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic006G116700 Sobic006G116700 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic004G198400--Sobic006G137100 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400
Octagon: transcription factors


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