Gene annotation
Transcriptome id Sobic.006G213000.1
Synonym Sb06g028330, RPS11-BETA
Functional annotation ribosomal protein S17, putative, expressed
UniProt C5YFQ2
Pfam PF00366 PF16205
Panther DB PTHR10744 PTHR10744:SF10
NCBI CDD KOG1728; 40S ribosomal protein S11
KEGG Orthology K02949; RP-S11e, small subunit ribosomal protein S11e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G23740 : ribosomal protein S11-beta
RAP-DB (Rice) LOC_Os08g10608.1 : ribosomal protein S17, putative, expressed
MaizeGDB (Corn) Zm00025a057012 , Zm00025a009814
Brachypodium PNT61843 , KQJ95580
Barley HORVU2Hr1G099230.1 , HORVU2Hr1G099230.3 , HORVU2Hr1G099230.2 , HORVU2Hr1G099230.5 , HORVU2Hr1G099230.7 , HORVU2Hr1G099230.6 , HORVU2Hr1G099230.9 , HORVU2Hr1G099230.8 , HORVU2Hr1G099230.15 , HORVU2Hr1G099230.14 , HORVU2Hr1G099230.17 , HORVU2Hr1G099230.16 , HORVU2Hr1G099230.11 , HORVU2Hr1G099230.10 , HORVU2Hr1G099230.13 , HORVU2Hr1G099230.12 , HORVU2Hr1G099230.19 , HORVU2Hr1G099230.18
Wheat TraesCS2B02G443000 , TraesCS4D02G276300 , TraesCS6D02G203900 , TraesCS6A02G231200 , TraesCS2D02G421300
Populus -


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cDNA sequences
Sobic.006G213000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
2 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
3 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
4 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
5 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
6 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
7 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
8 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
9 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
12 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
14 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
15 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
16 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
17 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
18 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
19 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
20 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae


Gene co-expression network
sample Sobic006G213000 Sobic006G213000 Sobic006G137100 Sobic006G137100 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic003G387900 Sobic003G387900 Sobic006G213000--Sobic003G387900 Sobic002G379500 Sobic002G379500 Sobic006G213000--Sobic002G379500 Sobic002G056200 Sobic002G056200 Sobic006G213000--Sobic002G056200 Sobic007G019400 Sobic007G019400 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic001G403500 Sobic001G403500 Sobic006G213000--Sobic001G403500 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic009G050300 Sobic009G050300 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic004G008400 Sobic004G008400 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic007G053300--Sobic006G213000 Sobic007G053300--Sobic009G076400 Sobic007G053300--Sobic006G137100 Sobic007G053300--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic007G053300--Sobic003G249700 Sobic001G226500 Sobic001G226500 Sobic007G053300--Sobic001G226500 Sobic007G053300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic007G053300--Sobic004G198400 Sobic007G053300--Sobic002G379500 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic009G076400--Sobic007G053300 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200
Octagon: transcription factors


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