Gene annotation
Transcriptome id Sobic.002G081600.1
Synonym Sb02g006810
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5XDG5
Pfam PF01248
Panther DB PTHR11843
NCBI CDD KOG3406; 40S ribosomal protein S12
KEGG Orthology K02951; RP-S12e, small subunit ribosomal protein S12e
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT2G32060 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os07g05580.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a037352 , Zm00025a013380 , Zm00025a044677 , Zm00025a045440
Brachypodium KQK12873 , KQK12872 , KQK20310
Barley HORVU5Hr1G103330.10 , HORVU5Hr1G103330.9 , HORVU5Hr1G103330.8 , HORVU5Hr1G103330.7 , HORVU2Hr1G053290.10 , HORVU5Hr1G103330.5 , HORVU5Hr1G103330.3 , HORVU5Hr1G103330.2 , HORVU2Hr1G053290.9 , HORVU2Hr1G053290.8 , HORVU2Hr1G053290.5 , HORVU2Hr1G053290.4 , HORVU2Hr1G053290.7 , HORVU2Hr1G053290.6 , HORVU2Hr1G053290.1 , HORVU2Hr1G053290.3 , HORVU2Hr1G053290.2 , HORVU5Hr1G103330.6
Wheat TraesCS5B02G425100 , TraesCS2A02G228800 , TraesCS2B02G262700 , TraesCS2D02G237800 , TraesCS5D02G431700
Populus PNT52692 , PNT52693 , PNT52694


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cDNA sequences
Sobic.002G081600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
3 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
4 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
5 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
6 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
7 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
8 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
9 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
10 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
12 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
13 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
14 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
15 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
16 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
18 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
19 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
20 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e


Gene co-expression network
sample Sobic002G081600 Sobic002G081600 Sobic009G050300 Sobic009G050300 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic003G346600 Sobic003G346600 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic001G403500 Sobic001G403500 Sobic002G081600--Sobic001G403500 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic002G175100 Sobic002G175100 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic006G047400 Sobic006G047400 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic006G067800--Sobic002G200600 Sobic006G067800--Sobic002G081600 Sobic006G067800--Sobic001G402050 Sobic006G067800--Sobic006G116700 Sobic006G067800--Sobic009G050300 Sobic006G067800--Sobic009G215200 Sobic006G067800--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic006G067800--Sobic003G436700 Sobic006G067800--Sobic001G130301 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic001G403500--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic001G403500--Sobic004G198400 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic001G403500--Sobic010G206200
Octagon: transcription factors


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