Gene annotation
Transcriptome id Sobic.001G018900.1
Synonym Sb01g001850
Functional annotation 40S ribosomal protein S4, putative, expressed
UniProt C5WT26
Pfam PF01479 PF00467 PF08071 PF16121 PF00900
Panther DB PTHR11581 PTHR11581:SF10
NCBI CDD KOG0378; 40S ribosomal protein S4
KEGG Orthology K02987; RP-S4e, small subunit ribosomal protein S4e
Gene Ontology GO:0003723; RNA binding GO:0006412translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G58420 : Ribosomal protein S4 (RPS4A) family protein
RAP-DB (Rice) LOC_Os02g01560.1 : 40S ribosomal protein S4, putative, expressed
MaizeGDB (Corn) Zm00025a043310 , Zm00025a038094 , Zm00025a020236 , Zm00025a054496 , Zm00025a017974 , Zm00025a046117 , Zm00025a036492 , Zm00025a008970 , Zm00025a016357
Brachypodium KQK07461
Barley HORVU1Hr1G021720.5 , HORVU1Hr1G021720.4 , HORVU1Hr1G021720.3 , HORVU1Hr1G021720.2 , HORVU1Hr1G021720.1
Wheat TraesCS1B02G120600 , TraesCS1D02G101600 , TraesCS1A02G092900
Populus PNT00196


JBrowse

Open New Page


cDNA sequences
Sobic.001G018900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
2 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
3 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
4 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
5 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
6 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
7 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
8 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
9 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
10 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
11 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
13 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
14 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
15 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
16 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
19 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta


Gene co-expression network
sample Sobic001G018900 Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G018900--Sobic006G116700 Sobic009G215200 Sobic009G215200 Sobic001G018900--Sobic009G215200 Sobic009G050300 Sobic009G050300 Sobic001G018900--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic001G018900--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G130301 Sobic001G130301 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic001G403500 Sobic001G403500 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic001G036900--Sobic001G054900 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic002G375100--Sobic001G018900 Sobic002G375100--Sobic006G116700 Sobic002G375100--Sobic001G374700 Sobic002G375100--Sobic003G408100 Sobic002G375100--Sobic001G036900 Sobic002G375100--Sobic009G215200 Sobic002G375100--Sobic001G016400 Sobic002G375100--Sobic007G197800 Sobic002G375100--Sobic009G050300 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic001G016400--Sobic002G081600 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic003G408100--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic003G408100--Sobic009G163800 Sobic003G408100--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.