Gene annotation
Transcriptome id Sobic.003G408100.1
Synonym Sb03g044290, ATBBC1, BBC1, RSU2
Functional annotation ribosomal protein L13, putative, expressed
UniProt C5XGD3
Pfam PF01294
Panther DB PTHR11722 PTHR11722:SF1
NCBI CDD KOG3295; 60S Ribosomal protein L13
KEGG Orthology K02873; RP-L13e, large subunit ribosomal protein L13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G49010 : breast basic conserved 1
RAP-DB (Rice) LOC_Os06g02510.2 : ribosomal protein L13, putative, expressed
MaizeGDB (Corn) Zm00025a039272 , Zm00025a026228 , Zm00025a043030
Brachypodium KQJ95272 , KQJ92918
Barley HORVU7Hr1G067060.2 , HORVU7Hr1G067060.3 , HORVU6Hr1G009400.3 , HORVU6Hr1G009400.2 , HORVU7Hr1G067060.1
Wheat TraesCS7A02G296800 , TraesCS7D02G292800 , TraesCS6B02G064300 , TraesCS6D02G055400 , TraesCS6B02G064300 , TraesCS7B02G189800 , TraesCS7B02G189800 , TraesCS6A02G047900 , TraesCS6A02G047900
Populus -


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cDNA sequences
Sobic.003G408100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
2 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
3 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
4 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
5 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
6 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
7 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
9 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
10 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
11 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
12 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
13 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
14 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
15 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
16 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
17 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
18 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
20 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1


Gene co-expression network
sample Sobic003G408100 Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic001G018900 Sobic001G018900 Sobic003G408100--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic003G408100--Sobic009G163800 Sobic006G116700 Sobic006G116700 Sobic003G408100--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic003G408100--Sobic010G206200 Sobic009G050300 Sobic009G050300 Sobic003G408100--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic003G408100--Sobic001G036900 Sobic009G215200 Sobic009G215200 Sobic003G408100--Sobic009G215200 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G091801 Sobic001G091801 Sobic001G054900--Sobic001G091801 Sobic003G152600--Sobic003G408100 Sobic003G152600--Sobic001G054900 Sobic004G271400 Sobic004G271400 Sobic003G152600--Sobic004G271400 Sobic004G331400 Sobic004G331400 Sobic003G152600--Sobic004G331400 Sobic003G322400 Sobic003G322400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic003G152600--Sobic010G206200 Sobic001G374700 Sobic001G374700 Sobic003G152600--Sobic001G374700 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G130301 Sobic001G130301 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic001G018900--Sobic003G408100 Sobic009G166500 Sobic009G166500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G036900--Sobic001G054900 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700
Octagon: transcription factors


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