Gene annotation
Transcriptome id Sobic.002G375100.1
Synonym RPSAb, Sb02g039270
Functional annotation ribosomal protein S2, putative, expressed
UniProt C5XE18
Pfam PF16122 PF00318
Panther DB PTHR11489
NCBI CDD KOG0830; 40S ribosomal protein SA (P40)/Laminin receptor 1
KEGG Orthology K02998; RP-SAe, small subunit ribosomal protein SAe
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0015935small ribosomal subunit


Orthologs (automatic annotation)
TAIR AT3G04770 : 40s ribosomal protein SA B
RAP-DB (Rice) LOC_Os07g42450.1 : ribosomal protein S2, putative, expressed
MaizeGDB (Corn) Zm00025a053370 , Zm00025a053261 , Zm00025a015219 , Zm00025a000466
Brachypodium KQK15577 , KQK15576 , KQK21344 , KQK23288 , KQK15134
Barley HORVU7Hr1G091190.1 , HORVU6Hr1G022460.1 , HORVU4Hr1G077240.2 , HORVU4Hr1G077240.1
Wheat TraesCS2A02G168300 , TraesCS4B02G299100 , TraesCS4A02G006000 , TraesCS2D02G175700 , TraesCS4D02G298000 , TraesCS2B02G194400
Populus -


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cDNA sequences
Sobic.002G375100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
3 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
4 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
5 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
6 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
7 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
8 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
11 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
13 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
14 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
16 Sobic.010G012500 ATOZI1, putative, expressed -
17 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
18 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
19 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e


Gene co-expression network
sample Sobic002G375100 Sobic002G375100 Sobic001G018900 Sobic001G018900 Sobic002G375100--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic002G375100--Sobic006G116700 Sobic001G374700 Sobic001G374700 Sobic002G375100--Sobic001G374700 Sobic003G408100 Sobic003G408100 Sobic002G375100--Sobic003G408100 Sobic001G036900 Sobic001G036900 Sobic002G375100--Sobic001G036900 Sobic009G215200 Sobic009G215200 Sobic002G375100--Sobic009G215200 Sobic001G016400 Sobic001G016400 Sobic002G375100--Sobic001G016400 Sobic007G197800 Sobic007G197800 Sobic002G375100--Sobic007G197800 Sobic009G050300 Sobic009G050300 Sobic002G375100--Sobic009G050300 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic001G018900--Sobic002G375100 Sobic001G130301 Sobic001G130301 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic001G018900--Sobic003G408100 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic002G175100 Sobic002G175100 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic006G047400 Sobic006G047400 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001 Sobic001G054900 Sobic001G054900 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic003G408100--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic003G408100--Sobic009G163800 Sobic003G408100--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G403500 Sobic001G403500 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G036900--Sobic001G054900 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic001G016400--Sobic002G081600 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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