Gene annotation
Transcriptome id Sobic.006G116700.1
Synonym Sb06g019800
Functional annotation 60S ribosomal protein L6, putative, expressed
UniProt C5YAD0
Pfam PF01159
Panther DB PTHR10715 PTHR10715:SF3
NCBI CDD KOG1694; 60s ribosomal protein L6
KEGG Orthology K02934; RP-L6e, large subunit ribosomal protein L6e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G74050 : Ribosomal protein L6 family protein
RAP-DB (Rice) LOC_Os04g39700.1 : 60S ribosomal protein L6, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ94156
Barley -
Wheat TraesCS6B02G230300 , TraesCS6B02G230300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
3 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
4 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
5 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
6 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
7 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
8 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
9 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
10 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
12 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
15 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
16 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
17 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
18 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
19 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
20 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e


Gene co-expression network
sample Sobic006G116700 Sobic006G116700 Sobic009G050300 Sobic009G050300 Sobic006G116700--Sobic009G050300 Sobic007G197800 Sobic007G197800 Sobic006G116700--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic006G116700--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic004G008400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic007G184600 Sobic007G184600 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic001G036900--Sobic001G054900
Octagon: transcription factors


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