Gene annotation
Transcriptome id Sobic.007G018300.1
Synonym Sb07g001570
Functional annotation 60S acidic ribosomal protein, putative, expressed
UniProt C5YM25
Pfam PF00428
Panther DB PTHR21141
NCBI CDD KOG1762; 60s acidic ribosomal protein P1
KEGG Orthology K02942; RP-LP1, large subunit ribosomal protein LP1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24510 : 60S acidic ribosomal protein family
RAP-DB (Rice) LOC_Os08g02340.2 : 60S acidic ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a040254 , Zm00025a030251
Brachypodium KQJ94872
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G018300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
2 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
3 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
4 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
6 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
7 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
8 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
9 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
11 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
12 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
13 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
14 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
15 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
16 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
17 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
18 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
19 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic007G018300 Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic009G050300 Sobic009G050300 Sobic007G018300--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G019000 Sobic007G019000 Sobic007G018300--Sobic007G019000 Sobic007G197800 Sobic007G197800 Sobic007G018300--Sobic007G197800 Sobic001G054900 Sobic001G054900 Sobic007G018300--Sobic001G054900 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic004G104100 Sobic004G104100 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic010G206200 Sobic010G206200 Sobic005G019700--Sobic010G206200 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic009G215200--Sobic001G130301 Sobic002G081600 Sobic002G081600 Sobic009G215200--Sobic002G081600 Sobic001G018900 Sobic001G018900 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic001G403500 Sobic001G403500 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic001G016400--Sobic002G081600 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic003G408100 Sobic003G408100 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic001G054900--Sobic007G019000 Sobic009G163800 Sobic009G163800 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801
Octagon: transcription factors


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