Gene annotation
Transcriptome id Sobic.010G230700.1
Synonym
Functional annotation 60S ribosomal protein L27-3, putative, expressed
UniProt A0A194YL15
Pfam PF00467 PF01777
Panther DB PTHR10497
NCBI CDD KOG3418; 60S ribosomal protein L27
KEGG Orthology K02901; RP-L27e, large subunit ribosomal protein L27e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G15000 : Ribosomal L27e protein family
RAP-DB (Rice) LOC_Os10g41470.1 : 60S ribosomal protein L27-3, putative, expressed
MaizeGDB (Corn) Zm00025a041878 , Zm00025a057067 , Zm00025a018016
Brachypodium KQK16723
Barley HORVU3Hr1G023640.1 , HORVU5Hr1G054110.1 , HORVU5Hr1G054110.2 , HORVU5Hr1G054090.1 , HORVU6Hr1G053800.1 , HORVU6Hr1G037710.1 , HORVU4Hr1G087850.1 , HORVU4Hr1G078960.1 , HORVU5Hr1G054130.1 , HORVU1Hr1G034150.1 , HORVU0Hr1G018350.1 , HORVU2Hr1G086480.1 , HORVU7Hr1G098360.1 , HORVU7Hr1G063280.1 , HORVU5Hr1G054120.1 , HORVU4Hr1G090980.1 , HORVU7Hr1G063280.2 , HORVU6Hr1G005820.1 , HORVU5Hr1G010250.1 , HORVU1Hr1G034130.1 , HORVU7Hr1G102950.1 , HORVU4Hr1G049200.1 , HORVU4Hr1G087880.1 , HORVU4Hr1G020020.1 , HORVU6Hr1G047000.1 , HORVU0Hr1G032310.1 , HORVU5Hr1G054100.2 , HORVU5Hr1G054100.1 , HORVU7Hr1G098380.1 , HORVU3Hr1G027260.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G230700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
2 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
3 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
5 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
6 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
9 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
10 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
11 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
12 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
13 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
14 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
15 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
17 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
18 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
20 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e


Gene co-expression network
sample Sobic010G230700 Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic010G230700--Sobic005G019700 Sobic007G018300 Sobic007G018300 Sobic010G230700--Sobic007G018300 Sobic004G104100 Sobic004G104100 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic009G050300 Sobic009G050300 Sobic010G230700--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic010G230700--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic006G116700 Sobic006G116700 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic007G197800 Sobic007G197800 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic010G206200 Sobic010G206200 Sobic005G019700--Sobic010G206200 Sobic007G018300--Sobic010G230700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic001G054900 Sobic001G054900 Sobic007G018300--Sobic001G054900 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic010G166100 Sobic010G166100 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic009G054800--Sobic002G372400 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic007G019000--Sobic007G178600 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic002G372400--Sobic003G078200 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic002G372400--Sobic010G230700 Sobic002G372400--Sobic007G018300 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400
Octagon: transcription factors


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