Gene annotation
Transcriptome id Sobic.006G221200.1
Synonym Sb06g029070
Functional annotation 60S ribosomal protein L27-3, putative, expressed
UniProt C5YG70
Pfam PF00467 PF01777
Panther DB PTHR10497
NCBI CDD KOG3418; 60S ribosomal protein L27
KEGG Orthology K02901; RP-L27e, large subunit ribosomal protein L27e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G15000 : Ribosomal L27e protein family
RAP-DB (Rice) LOC_Os10g41470.1 : 60S ribosomal protein L27-3, putative, expressed
MaizeGDB (Corn) Zm00025a041878 , Zm00025a057067 , Zm00025a018016
Brachypodium KQK16723
Barley HORVU3Hr1G023640.1 , HORVU5Hr1G054110.1 , HORVU5Hr1G054110.2 , HORVU5Hr1G054090.1 , HORVU6Hr1G053800.1 , HORVU6Hr1G037710.1 , HORVU4Hr1G087850.1 , HORVU3Hr1G075110.1 , HORVU4Hr1G078960.1 , HORVU5Hr1G054130.1 , HORVU1Hr1G034150.1 , HORVU0Hr1G018350.1 , HORVU2Hr1G086480.1 , HORVU7Hr1G098360.1 , HORVU7Hr1G063280.1 , HORVU5Hr1G054120.1 , HORVU4Hr1G090980.1 , HORVU7Hr1G063280.2 , HORVU6Hr1G005820.1 , HORVU5Hr1G010250.1 , HORVU1Hr1G034130.1 , HORVU7Hr1G102950.1 , HORVU4Hr1G049200.1 , HORVU4Hr1G087880.1 , HORVU3Hr1G075130.1 , HORVU4Hr1G020020.1 , HORVU6Hr1G047000.1 , HORVU0Hr1G032310.1 , HORVU5Hr1G054100.2 , HORVU5Hr1G054100.1 , HORVU7Hr1G098380.1 , HORVU3Hr1G027260.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G221200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
2 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
3 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
4 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
5 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
6 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
9 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
10 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
11 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
12 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
16 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
18 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
19 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
20 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13


Gene co-expression network
sample Sobic006G221200 Sobic006G221200 Sobic004G104100 Sobic004G104100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic006G221200--Sobic007G178600 Sobic010G230700 Sobic010G230700 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic001G091801 Sobic001G091801 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic006G221200--Sobic005G019700 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic004G104100--Sobic009G050300 Sobic010G166100--Sobic004G104100 Sobic010G166100--Sobic006G221200 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic007G019000 Sobic007G019000 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic010G166100--Sobic002G047600 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic010G230700--Sobic005G019700 Sobic007G018300 Sobic007G018300 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic001G403500 Sobic001G403500 Sobic004G198400--Sobic001G403500 Sobic002G379500 Sobic002G379500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic010G206200--Sobic009G050300 Sobic010G206200--Sobic009G054800 Sobic001G054900 Sobic001G054900 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic009G215200 Sobic009G215200 Sobic010G206200--Sobic009G215200 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic006G116700 Sobic006G116700 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic007G197800 Sobic007G197800 Sobic005G019700--Sobic007G197800 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200
Octagon: transcription factors


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