Gene annotation
Transcriptome id Sobic.003G249700.1
Synonym Sb03g030600
Functional annotation 60S ribosomal protein L18a, putative, expressed
UniProt C5XG00
Pfam PF01775
Panther DB PTHR10052 PTHR10052:SF10
NCBI CDD KOG0829; 60S ribosomal protein L18A
KEGG Orthology K02882; RP-L18Ae, large subunit ribosomal protein L18Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G34480 : Ribosomal protein L18ae/LX family protein
RAP-DB (Rice) LOC_Os01g47660.1 : 60S ribosomal protein L18a, putative, expressed
MaizeGDB (Corn) Zm00025a038757 , Zm00025a028127 , Zm00025a044581 , Zm00025a030911 , Zm00025a036615
Brachypodium KQK09754 , KQK09092 , KQK04859
Barley HORVU1Hr1G088040.3 , HORVU1Hr1G088040.2 , HORVU1Hr1G088040.1 , HORVU1Hr1G088040.4 , HORVU3Hr1G060800.2 , HORVU3Hr1G060800.1
Wheat TraesCS1A02G399800 , TraesCS3A02G247600 , TraesCS3D02G243800 , TraesCS1D02G407500 , TraesCS1B02G427900 , TraesCS3B02G271800
Populus -


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cDNA sequences
Sobic.003G249700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
2 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
3 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
4 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
5 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
7 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
8 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
9 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
10 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
11 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
12 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
13 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
14 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
16 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
17 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
18 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
19 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
20 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e


Gene co-expression network
sample Sobic003G249700 Sobic003G249700 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic002G047600 Sobic002G047600 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic001G226500--Sobic003G249700 Sobic001G226500--Sobic007G019400 Sobic001G226500--Sobic009G076400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic007G053300 Sobic007G053300 Sobic001G226500--Sobic007G053300 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic009G054800 Sobic009G054800 Sobic001G226500--Sobic009G054800 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic010G069400 Sobic010G069400 Sobic001G039400--Sobic010G069400 Sobic002G304900 Sobic002G304900 Sobic001G039400--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic005G050500 Sobic005G050500 Sobic001G039400--Sobic005G050500 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic009G050300 Sobic009G050300 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic006G116700 Sobic006G116700 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G109600--Sobic003G436700
Octagon: transcription factors


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