Gene annotation
Transcriptome id Sobic.001G226500.1
Synonym Sb01g019840
Functional annotation 60S ribosomal protein L21-2, putative, expressed
UniProt C5WZD5
Pfam PF01157
Panther DB PTHR20981
NCBI CDD KOG1732; 60S ribosomal protein L21
KEGG Orthology K02889; RP-L21e, large subunit ribosomal protein L21e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G57860 : Translation protein SH3-like family protein
RAP-DB (Rice) LOC_Os03g04750.1 : 60S ribosomal protein L21-2, putative, expressed
MaizeGDB (Corn) Zm00025a017679 , Zm00025a053273 , Zm00025a053396 , Zm00025a006672 , Zm00025a000569
Brachypodium PNT78232 , KQJ96997 , KQK23719
Barley HORVU1Hr1G038890.1 , HORVU4Hr1G084420.2
Wheat TraesCS5A02G513300 , TraesCS1B02G164500 , TraesCS1D02G145100 , TraesCS4B02G344400 , TraesCS4D02G339500 , TraesCS1A02G147000
Populus PNT32549


JBrowse

Open New Page


cDNA sequences
Sobic.001G226500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
2 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
4 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
5 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
6 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
7 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
8 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
9 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
10 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
11 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
12 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
13 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
15 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
16 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
18 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
19 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e


Gene co-expression network
sample Sobic001G226500 Sobic001G226500 Sobic003G249700 Sobic003G249700 Sobic001G226500--Sobic003G249700 Sobic007G019400 Sobic007G019400 Sobic001G226500--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic001G226500--Sobic009G076400 Sobic004G008400 Sobic004G008400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic007G053300 Sobic007G053300 Sobic001G226500--Sobic007G053300 Sobic006G213000 Sobic006G213000 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic009G054800 Sobic009G054800 Sobic001G226500--Sobic009G054800 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic002G047600 Sobic002G047600 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic009G076400--Sobic007G053300 Sobic006G137100 Sobic006G137100 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic009G050300 Sobic009G050300 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic003G346600 Sobic003G346600 Sobic004G008400--Sobic003G346600 Sobic006G116700 Sobic006G116700 Sobic004G008400--Sobic006G116700 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic002G379500 Sobic002G379500 Sobic004G008400--Sobic002G379500 Sobic002G286900--Sobic006G137100 Sobic008G108601 Sobic008G108601 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic002G286900--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600 Sobic007G053300--Sobic006G213000 Sobic007G053300--Sobic009G076400 Sobic007G053300--Sobic006G137100 Sobic007G053300--Sobic007G019400 Sobic007G053300--Sobic003G249700 Sobic007G053300--Sobic001G226500 Sobic007G053300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic007G053300--Sobic004G198400 Sobic007G053300--Sobic002G379500 Sobic006G213000--Sobic006G137100 Sobic006G213000--Sobic007G053300 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic009G215200 Sobic009G215200 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G402050 Sobic001G402050 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic002G200600 Sobic002G200600 Sobic001G130301--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G130301--Sobic001G374700 Sobic003G078200 Sobic003G078200 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic002G372400 Sobic002G372400 Sobic009G054800--Sobic002G372400 Sobic005G019700 Sobic005G019700 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic010G230700 Sobic010G230700 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.