Gene annotation
Transcriptome id Sobic.007G019400.1
Synonym RPS13, ATRPS13A, RPS13A, PFL2, Sb07g001670
Functional annotation 40S ribosomal protein S13, putative, expressed
UniProt C5YMD1
Pfam PF00312 PF08069
Panther DB PTHR11885 PTHR11885:SF7
NCBI CDD KOG0400; 40S ribosomal protein S13
KEGG Orthology K02953; RP-S13e, small subunit ribosomal protein S13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G00100 : ribosomal protein S13A
RAP-DB (Rice) LOC_Os08g02410.1 : 40S ribosomal protein S13, putative, expressed
MaizeGDB (Corn) Zm00025a030246 , Zm00025a040292 , Zm00025a030247
Brachypodium KQK15614 , KQJ94882 , KQJ94881 , KQJ94880
Barley HORVU7Hr1G075250.1 , HORVU7Hr1G075250.2 , HORVU7Hr1G075250.3 , HORVU7Hr1G075290.4 , HORVU7Hr1G075290.5 , HORVU7Hr1G075290.6 , HORVU7Hr1G075290.7 , HORVU7Hr1G075290.1 , HORVU7Hr1G075290.2 , HORVU7Hr1G075290.3
Wheat TraesCS7A02G316800 , TraesCS7D02G313200 , TraesCS7B02G217400 , TraesCS7B02G217300 , TraesCS7D02G313300 , TraesCS7A02G316200
Populus -


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cDNA sequences
Sobic.007G019400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
2 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
3 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
4 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
5 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
6 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
7 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
8 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
9 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
10 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
11 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
12 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
13 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
14 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
15 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
17 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
19 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
20 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e


Gene co-expression network
sample Sobic007G019400 Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic002G047600 Sobic002G047600 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic007G053300 Sobic007G053300 Sobic009G076400--Sobic007G053300 Sobic006G137100 Sobic006G137100 Sobic009G076400--Sobic006G137100 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic009G050300 Sobic009G050300 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic010G251600--Sobic010G206200 Sobic010G251600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic010G251600--Sobic003G436700 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic006G213000--Sobic006G137100 Sobic006G213000--Sobic007G053300 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic002G379500 Sobic002G379500 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic001G226500--Sobic003G249700 Sobic001G226500--Sobic007G019400 Sobic001G226500--Sobic009G076400 Sobic001G226500--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic001G226500--Sobic002G286900 Sobic001G226500--Sobic007G053300 Sobic001G226500--Sobic006G213000 Sobic001G130301 Sobic001G130301 Sobic001G226500--Sobic001G130301 Sobic001G226500--Sobic009G054800
Octagon: transcription factors


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