Gene annotation
Transcriptome id Sobic.010G251600.1
Synonym Sb10g028990
Functional annotation 60S acidic ribosomal protein, putative, expressed
UniProt C5Z967
Pfam PF00428
Panther DB PTHR21141
NCBI CDD -
KEGG Orthology K02942; RP-LP1, large subunit ribosomal protein LP1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25890 : 60S acidic ribosomal protein family
RAP-DB (Rice) LOC_Os01g13080.1 : 60S acidic ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a041772 , Zm00025a018368
Brachypodium KQK17399
Barley HORVU7Hr1G096990.1 , HORVU7Hr1G096990.2
Wheat TraesCS7D02G411600 , TraesCS7A02G419100
Populus -


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cDNA sequences
Sobic.010G251600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
2 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
4 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
5 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
6 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
7 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
8 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
9 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
12 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
13 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
14 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
15 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
16 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
17 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
18 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
19 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
20 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae


Gene co-expression network
sample Sobic010G251600 Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic010G251600--Sobic010G206200 Sobic007G019400 Sobic007G019400 Sobic010G251600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic009G050300 Sobic009G050300 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic002G047600 Sobic002G047600 Sobic007G019400--Sobic002G047600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic004G008400 Sobic004G008400 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic003G436700--Sobic010G251600 Sobic006G067800 Sobic006G067800 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic002G081600 Sobic002G081600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic001G018900 Sobic001G018900 Sobic009G215200--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G091801 Sobic001G091801 Sobic001G054900--Sobic001G091801 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801
Octagon: transcription factors


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