Gene annotation
Transcriptome id Sobic.002G047600.1
Synonym Sb02g004020
Functional annotation 60S ribosomal protein L15, putative, expressed
UniProt C5XAD5
Pfam PF00827
Panther DB PTHR11847
NCBI CDD KOG1678; 60s ribosomal protein L15
KEGG Orthology K02877; RP-L15e, large subunit ribosomal protein L15e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G16720 : Ribosomal protein L23/L15e family protein
RAP-DB (Rice) LOC_Os05g19370.1 : 60S ribosomal protein L15, putative, expressed
MaizeGDB (Corn) Zm00025a045114 , Zm00025a048075 , Zm00025a048077 , Zm00025a014678
Brachypodium KQJ96434 , KQK16194
Barley HORVU2Hr1G052650.2 , HORVU2Hr1G052650.1 , HORVU4Hr1G058360.2 , HORVU4Hr1G058360.1
Wheat TraesCS2D02G235500 , TraesCS5B02G154300 , TraesCS2A02G227500 , TraesCS2B02G262600 , TraesCS5A02G156100 , TraesCS5D02G161400
Populus -


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cDNA sequences
Sobic.002G047600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
2 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
4 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
5 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
6 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
7 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
10 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
11 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
12 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
13 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
14 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
15 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
17 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
19 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
20 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e


Gene co-expression network
sample Sobic002G047600 Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic006G137100 Sobic006G137100 Sobic002G047600--Sobic006G137100 Sobic003G249700 Sobic003G249700 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic009G050300 Sobic009G050300 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic004G008400 Sobic004G008400 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic001G436200--Sobic002G379500 Sobic001G436200--Sobic002G047600 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic001G436200--Sobic006G137100 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic006G116700 Sobic006G116700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic008G108601--Sobic002G047600 Sobic008G108601--Sobic007G019400 Sobic008G108601--Sobic010G206200 Sobic008G108601--Sobic002G049300 Sobic008G108601--Sobic001G226500
Octagon: transcription factors


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