Gene annotation
Transcriptome id Sobic.006G138100.2,Sobic.006G138100.1
Synonym Sb06g021750, EMB1080
Functional annotation ribosomal protein S17, putative, expressed
UniProt A0A1B6PLW1 , C5XXL8
Pfam PF00366 PF16205 PF16205
Panther DB PTHR10744 PTHR10744:SF10
NCBI CDD KOG1728; 40S ribosomal protein S11
KEGG Orthology K02949; RP-S11e, small subunit ribosomal protein S11e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G48930 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os04g42380.1 : ribosomal protein S17, putative, expressed
MaizeGDB (Corn) Zm00025a009814 , Zm00025a010777
Brachypodium KQK00312
Barley HORVU6Hr1G056610.10 , HORVU6Hr1G056610.6 , HORVU2Hr1G099230.1 , HORVU6Hr1G056610.7 , HORVU2Hr1G099230.3 , HORVU6Hr1G056610.5 , HORVU6Hr1G056610.2 , HORVU6Hr1G056610.3 , HORVU2Hr1G099230.7 , HORVU6Hr1G056610.1 , HORVU2Hr1G099230.9 , HORVU2Hr1G099230.8 , HORVU6Hr1G056610.8 , HORVU2Hr1G099230.5 , HORVU2Hr1G099230.15 , HORVU2Hr1G099230.14 , HORVU2Hr1G099230.17 , HORVU2Hr1G099230.16 , HORVU2Hr1G099230.11 , HORVU2Hr1G099230.10 , HORVU2Hr1G099230.13 , HORVU2Hr1G099230.12 , HORVU2Hr1G099230.6 , HORVU2Hr1G099230.19 , HORVU2Hr1G099230.18 , HORVU2Hr1G099230.4 , HORVU2Hr1G099230.2 , HORVU6Hr1G056610.9
Wheat TraesCS2B02G443000 , TraesCS6D02G203900 , TraesCS6A02G231200 , TraesCS2D02G421300
Populus PNT49627 , PNT03148


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
2 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
3 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
4 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
6 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
7 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
8 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
10 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
12 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
13 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
14 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
17 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
19 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
20 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae


Gene co-expression network
sample Sobic006G138100 Sobic006G138100 Sobic001G436200 Sobic001G436200 Sobic006G138100--Sobic001G436200 Sobic002G047600 Sobic002G047600 Sobic006G138100--Sobic002G047600 Sobic002G379500 Sobic002G379500 Sobic006G138100--Sobic002G379500 Sobic007G019000 Sobic007G019000 Sobic006G138100--Sobic007G019000 Sobic006G137100 Sobic006G137100 Sobic006G138100--Sobic006G137100 Sobic004G008400 Sobic004G008400 Sobic006G138100--Sobic004G008400 Sobic003G109600 Sobic003G109600 Sobic006G138100--Sobic003G109600 Sobic009G050300 Sobic009G050300 Sobic006G138100--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic006G138100--Sobic006G116700 Sobic001G436200--Sobic002G379500 Sobic001G436200--Sobic002G047600 Sobic002G056200 Sobic002G056200 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic001G436200--Sobic006G137100 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic003G249700 Sobic003G249700 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic001G403500 Sobic001G403500 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G109600--Sobic003G436700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900
Octagon: transcription factors


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