Gene annotation
Transcriptome id Sobic.007G019000.1
Synonym RPS13, ATRPS13A, Sb07g001620, RPS13A, PFL2
Functional annotation 40S ribosomal protein S13, putative, expressed
UniProt C5YMC5
Pfam PF00312 PF08069
Panther DB PTHR11885 PTHR11885:SF7
NCBI CDD KOG0400; 40S ribosomal protein S13
KEGG Orthology K02953; RP-S13e, small subunit ribosomal protein S13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G00100 : ribosomal protein S13A
RAP-DB (Rice) LOC_Os08g02410.1 : 40S ribosomal protein S13, putative, expressed
MaizeGDB (Corn) Zm00025a030246 , Zm00025a030247 , Zm00025a040292
Brachypodium KQJ94882 , KQJ94881 , KQJ94880
Barley HORVU7Hr1G075250.1 , HORVU7Hr1G075250.2 , HORVU7Hr1G075250.3 , HORVU2Hr1G037940.2 , HORVU2Hr1G037940.1 , HORVU7Hr1G075290.4 , HORVU7Hr1G075290.5 , HORVU7Hr1G075290.6 , HORVU7Hr1G075290.7 , HORVU7Hr1G075290.1 , HORVU7Hr1G075290.2 , HORVU7Hr1G075290.3
Wheat TraesCS7A02G316800 , TraesCS7B02G217400 , TraesCS7D02G313300 , TraesCS7A02G316200 , TraesCS7D02G313200 , TraesCS7B02G217300
Populus -


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cDNA sequences
Sobic.007G019000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
2 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
3 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
4 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
5 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
6 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
8 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
9 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
10 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
11 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
12 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
14 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
15 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
16 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
17 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
18 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
19 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
20 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e


Gene co-expression network
sample Sobic007G019000 Sobic007G019000 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic003G408100 Sobic003G408100 Sobic001G054900--Sobic003G408100 Sobic010G206200 Sobic010G206200 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic001G054900--Sobic006G116700 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G036900 Sobic001G036900 Sobic001G054900--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic001G054900--Sobic001G018900 Sobic001G091801 Sobic001G091801 Sobic001G054900--Sobic001G091801 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic004G322200--Sobic007G019000 Sobic004G322200--Sobic007G178600 Sobic004G322200--Sobic004G103800 Sobic010G166100 Sobic010G166100 Sobic004G322200--Sobic010G166100 Sobic004G322200--Sobic001G054900 Sobic004G322200--Sobic010G230700 Sobic004G322200--Sobic006G221200 Sobic001G376600 Sobic001G376600 Sobic004G322200--Sobic001G376600 Sobic004G331400 Sobic004G331400 Sobic004G322200--Sobic004G331400 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic004G104100 Sobic004G104100 Sobic004G103800--Sobic004G104100 Sobic004G104300 Sobic004G104300 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G103800--Sobic004G322200 Sobic004G103800--Sobic007G018300 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic001G085400 Sobic001G085400 Sobic002G115000--Sobic001G085400 Sobic002G115000--Sobic007G019000 Sobic001G058900 Sobic001G058900 Sobic002G115000--Sobic001G058900 Sobic002G304900 Sobic002G304900 Sobic002G115000--Sobic002G304900 Sobic002G115000--Sobic002G047600 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic002G115000--Sobic007G178600 Sobic002G049300 Sobic002G049300 Sobic002G115000--Sobic002G049300 Sobic001G533500--Sobic007G019000 Sobic001G533500--Sobic007G018300 Sobic001G533500--Sobic010G230700 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic001G533500--Sobic007G178600 Sobic001G533500--Sobic006G116700 Sobic001G533500--Sobic004G104100 Sobic001G533500--Sobic004G008400
Octagon: transcription factors


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