Gene annotation
Transcriptome id Sobic.010G166100.1
Synonym Sb10g021950
Functional annotation 40S ribosomal protein S24, putative, expressed
UniProt C5Z4K7
Pfam PF01282
Panther DB PTHR10496
NCBI CDD KOG3424; 40S ribosomal protein S24
KEGG Orthology K02974; RP-S24e, small subunit ribosomal protein S24e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G28060 : Ribosomal protein S24e family protein
RAP-DB (Rice) LOC_Os01g52490.1 : 40S ribosomal protein S24, putative, expressed
MaizeGDB (Corn) Zm00025a020117 , Zm00025a027742
Brachypodium KQK18011 , KQJ94127
Barley HORVU7Hr1G088580.1 , HORVU2Hr1G055560.1 , HORVU2Hr1G055560.3 , HORVU2Hr1G055560.2 , HORVU3Hr1G068610.2 , HORVU3Hr1G068610.3 , HORVU3Hr1G068610.1 , HORVU3Hr1G068610.4 , HORVU3Hr1G068610.5 , HORVU6Hr1G044840.1 , HORVU6Hr1G044840.3 , HORVU6Hr1G044840.4 , HORVU6Hr1G044840.5 , HORVU1Hr1G044880.1
Wheat TraesCS3D02G285800 , TraesCS7A02G356300 , TraesCS3A02G286000 , TraesCS7B02G271400 , TraesCS7D02G366400 , TraesCS6B02G234000
Populus -


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cDNA sequences
Sobic.010G166100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
2 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
3 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
5 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
7 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
8 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
9 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
10 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
11 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
12 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
13 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
14 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
15 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
17 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
20 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e


Gene co-expression network
sample Sobic010G166100 Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic010G166100--Sobic004G104100 Sobic006G221200 Sobic006G221200 Sobic010G166100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic010G166100--Sobic004G103800 Sobic007G178600 Sobic007G178600 Sobic010G166100--Sobic007G178600 Sobic007G019000 Sobic007G019000 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic010G166100--Sobic002G047600 Sobic001G091801 Sobic001G091801 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic005G019700 Sobic005G019700 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic004G104100--Sobic009G050300 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic004G322200--Sobic007G019000 Sobic004G322200--Sobic007G178600 Sobic004G322200--Sobic004G103800 Sobic004G322200--Sobic010G166100 Sobic004G322200--Sobic001G054900 Sobic004G322200--Sobic010G230700 Sobic004G322200--Sobic006G221200 Sobic001G376600 Sobic001G376600 Sobic004G322200--Sobic001G376600 Sobic004G331400 Sobic004G331400 Sobic004G322200--Sobic004G331400 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic006G260400--Sobic003G346600 Sobic006G260400--Sobic007G178600 Sobic006G260400--Sobic010G206200 Sobic006G260400--Sobic009G163800 Sobic006G260400--Sobic010G166100 Sobic006G260400--Sobic001G376600 Sobic006G260400--Sobic006G221200 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic002G047600--Sobic007G019400 Sobic006G137100 Sobic006G137100 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601
Octagon: transcription factors


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