Gene annotation
Transcriptome id Sobic.004G104300.1
Synonym Sb04g008540, RPL16A
Functional annotation ribosomal protein L5, putative, expressed
UniProt C5XYX5
Pfam PF00281 PF00673
Panther DB PTHR11994 PTHR11994:SF14
NCBI CDD KOG0397; 60S ribosomal protein L11
KEGG Orthology K02868; RP-L11e, large subunit ribosomal protein L11e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42740 : ribosomal protein large subunit 16A
RAP-DB (Rice) LOC_Os02g14059.1 : ribosomal protein L5, putative, expressed
MaizeGDB (Corn) Zm00025a022996 , Zm00025a037122 , Zm00025a051094 , Zm00025a020033 , Zm00025a034509
Brachypodium -
Barley HORVU3Hr1G026060.3 , HORVU3Hr1G026060.2 , HORVU3Hr1G026060.1 , HORVU3Hr1G026060.5 , HORVU7Hr1G044560.1 , HORVU3Hr1G026060.4 , HORVU1Hr1G028820.6 , HORVU1Hr1G028820.5 , HORVU1Hr1G028820.4 , HORVU1Hr1G028820.2 , HORVU1Hr1G028820.1
Wheat TraesCS3D02G137600 , TraesCS3A02G136800 , TraesCS1A02G125100 , TraesCS1D02G128800 , TraesCS3B02G154600
Populus -


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cDNA sequences
Sobic.004G104300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
2 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
4 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
5 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
6 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
9 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
10 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
13 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
14 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
15 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
16 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
18 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
19 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
20 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e


Gene co-expression network
sample Sobic004G104300 Sobic004G104300 Sobic004G103800 Sobic004G103800 Sobic004G104300--Sobic004G103800 Sobic004G104100 Sobic004G104100 Sobic004G104300--Sobic004G104100 Sobic010G259900 Sobic010G259900 Sobic004G104300--Sobic010G259900 Sobic010G230700 Sobic010G230700 Sobic004G104300--Sobic010G230700 Sobic003G408100 Sobic003G408100 Sobic004G104300--Sobic003G408100 Sobic007G018300 Sobic007G018300 Sobic004G104300--Sobic007G018300 Sobic001G091801 Sobic001G091801 Sobic004G104300--Sobic001G091801 Sobic003G322400 Sobic003G322400 Sobic004G104300--Sobic003G322400 Sobic005G019700 Sobic005G019700 Sobic004G104300--Sobic005G019700 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic004G103800--Sobic007G018300 Sobic004G104100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic004G104100--Sobic009G050300 Sobic010G260100 Sobic010G260100 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic010G259900--Sobic003G322400 Sobic007G212600 Sobic007G212600 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic003G321700 Sobic003G321700 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic001G046300 Sobic001G046300 Sobic010G259900--Sobic001G046300 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic001G054900 Sobic001G054900 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic001G018900 Sobic001G018900 Sobic003G408100--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic003G408100--Sobic009G163800 Sobic006G116700 Sobic006G116700 Sobic003G408100--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic003G408100--Sobic001G036900 Sobic009G215200 Sobic009G215200 Sobic003G408100--Sobic009G215200 Sobic007G018300--Sobic010G230700 Sobic007G018300--Sobic005G019700 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G197800 Sobic007G197800 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic001G374700 Sobic001G374700 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200
Octagon: transcription factors


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