Gene annotation
Transcriptome id Sobic.004G331400.1
Synonym Sb04g036030
Functional annotation 60S ribosomal protein L39, putative, expressed
UniProt C5XUH6
Pfam PF00832
Panther DB PTHR19970
NCBI CDD KOG0002; 60s ribosomal protein L39
KEGG Orthology K02924; RP-L39e, large subunit ribosomal protein L39e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G31985 : Ribosomal protein L39 family protein
RAP-DB (Rice) LOC_Os02g55370.1 : 60S ribosomal protein L39, putative, expressed
MaizeGDB (Corn) Zm00025a049796 , Zm00025a032924
Brachypodium KQK19296 , PNT67017 , KQJ95898
Barley HORVU7Hr1G029860.2 , HORVU7Hr1G029860.3 , HORVU7Hr1G029860.1 , HORVU0Hr1G017360.3 , HORVU0Hr1G017360.2 , HORVU0Hr1G017360.1
Wheat TraesCS7D02G147000 , TraesCS6D02G343900 , TraesCS6A02G360400 , TraesCS7A02G145700 , TraesCS6B02G393300
Populus PNT32421 , PNT32422 , PNS93894 , PNS93895 , PNS93893


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cDNA sequences
Sobic.004G331400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
2 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
5 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
6 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
7 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
9 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
10 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
11 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
12 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
13 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
14 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
15 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
17 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
19 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
20 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae


Gene co-expression network
sample Sobic004G331400 Sobic004G331400 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic003G346600 Sobic003G346600 Sobic004G331400--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic004G331400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic009G215200 Sobic009G215200 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic006G047400 Sobic006G047400 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic001G376600--Sobic004G331400 Sobic001G376600--Sobic009G105700 Sobic010G206200 Sobic010G206200 Sobic001G376600--Sobic010G206200 Sobic001G376600--Sobic001G091801 Sobic001G376600--Sobic002G175100 Sobic001G376600--Sobic009G050300 Sobic006G106100 Sobic006G106100 Sobic001G376600--Sobic006G106100 Sobic005G019700 Sobic005G019700 Sobic001G376600--Sobic005G019700 Sobic006G221200 Sobic006G221200 Sobic001G376600--Sobic006G221200 Sobic009G166500 Sobic009G166500 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic009G105700--Sobic004G331400 Sobic009G105700--Sobic001G376600 Sobic009G105700--Sobic002G175100 Sobic009G105700--Sobic006G047400 Sobic003G322400 Sobic003G322400 Sobic009G105700--Sobic003G322400 Sobic009G105700--Sobic003G346600 Sobic001G493001 Sobic001G493001 Sobic009G105700--Sobic001G493001 Sobic009G105600 Sobic009G105600 Sobic009G105700--Sobic009G105600 Sobic010G063801 Sobic010G063801 Sobic009G105700--Sobic010G063801 Sobic001G054900 Sobic001G054900 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic001G018900 Sobic001G018900 Sobic003G408100--Sobic001G018900 Sobic003G408100--Sobic009G163800 Sobic003G408100--Sobic006G116700 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic004G008400 Sobic004G008400 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100
Octagon: transcription factors


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