Gene annotation
Transcriptome id Sobic.009G105700.1
Synonym Sb09g017150
Functional annotation 60S ribosomal protein L29-2, putative, expressed
UniProt C5YWN2
Pfam PF01779
Panther DB PTHR12884
NCBI CDD -
KEGG Orthology K02905; RP-L29e, large subunit ribosomal protein L29e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G06680 : Ribosomal L29e protein family
RAP-DB (Rice) LOC_Os05g28750.1 : 60S ribosomal protein L29-2, putative, expressed
MaizeGDB (Corn) Zm00025a024297
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
2 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
4 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
5 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
7 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
8 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
9 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
10 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
11 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
12 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
13 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
15 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
16 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
17 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
18 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
19 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
20 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2


Gene co-expression network
sample Sobic009G105700 Sobic009G105700 Sobic004G331400 Sobic004G331400 Sobic009G105700--Sobic004G331400 Sobic001G376600 Sobic001G376600 Sobic009G105700--Sobic001G376600 Sobic002G175100 Sobic002G175100 Sobic009G105700--Sobic002G175100 Sobic006G047400 Sobic006G047400 Sobic009G105700--Sobic006G047400 Sobic003G322400 Sobic003G322400 Sobic009G105700--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic009G105700--Sobic003G346600 Sobic001G493001 Sobic001G493001 Sobic009G105700--Sobic001G493001 Sobic009G105600 Sobic009G105600 Sobic009G105700--Sobic009G105600 Sobic010G063801 Sobic010G063801 Sobic009G105700--Sobic010G063801 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic004G331400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic001G376600--Sobic004G331400 Sobic001G376600--Sobic009G105700 Sobic010G206200 Sobic010G206200 Sobic001G376600--Sobic010G206200 Sobic001G376600--Sobic001G091801 Sobic001G376600--Sobic002G175100 Sobic001G376600--Sobic009G050300 Sobic006G106100 Sobic006G106100 Sobic001G376600--Sobic006G106100 Sobic005G019700 Sobic005G019700 Sobic001G376600--Sobic005G019700 Sobic006G221200 Sobic006G221200 Sobic001G376600--Sobic006G221200 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic009G215200 Sobic009G215200 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic004G008400 Sobic004G008400 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic001G493001--Sobic002G200600 Sobic009G105600--Sobic009G105700 Sobic009G105600--Sobic004G331400 Sobic009G105600--Sobic002G175100 Sobic004G271400 Sobic004G271400 Sobic009G105600--Sobic004G271400 Sobic002G414700 Sobic002G414700 Sobic009G105600--Sobic002G414700 Sobic009G105600--Sobic007G184600 Sobic009G105600--Sobic003G322400 Sobic009G105600--Sobic006G047400 Sobic009G105600--Sobic001G374700 Sobic010G063801--Sobic002G081600 Sobic010G063801--Sobic002G200600 Sobic010G063801--Sobic006G116700 Sobic010G251600 Sobic010G251600 Sobic010G063801--Sobic010G251600 Sobic010G063801--Sobic001G130301 Sobic003G436700 Sobic003G436700 Sobic010G063801--Sobic003G436700 Sobic010G063801--Sobic009G105700 Sobic010G063801--Sobic009G215200 Sobic010G063801--Sobic001G374700
Octagon: transcription factors


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