Gene annotation
Transcriptome id Sobic.006G260400.1
Synonym Sb06g032330
Functional annotation 60S acidic ribosomal protein, putative, expressed
UniProt C5YA36
Pfam PF00428
Panther DB PTHR21141 PTHR21141:SF50
NCBI CDD KOG3449; 60S acidic ribosomal protein P2
KEGG Orthology K02943; RP-LP2, large subunit ribosomal protein LP2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44590 : 60S acidic ribosomal protein family
RAP-DB (Rice) LOC_Os01g09510.4 : 60S acidic ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a009372 , Zm00025a057342 , Zm00025a036682 , Zm00025a036683 , Zm00025a036680 , Zm00025a036681
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G260400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
2 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
3 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
4 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
5 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
6 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
7 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
8 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
9 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
10 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
11 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
12 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
13 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
14 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
16 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
17 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
18 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
19 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic006G260400 Sobic006G260400 Sobic004G331400 Sobic004G331400 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic003G346600 Sobic003G346600 Sobic006G260400--Sobic003G346600 Sobic007G178600 Sobic007G178600 Sobic006G260400--Sobic007G178600 Sobic010G206200 Sobic010G206200 Sobic006G260400--Sobic010G206200 Sobic009G163800 Sobic009G163800 Sobic006G260400--Sobic009G163800 Sobic010G166100 Sobic010G166100 Sobic006G260400--Sobic010G166100 Sobic001G376600 Sobic001G376600 Sobic006G260400--Sobic001G376600 Sobic006G221200 Sobic006G221200 Sobic006G260400--Sobic006G221200 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic004G008400 Sobic004G008400 Sobic002G255300--Sobic004G008400 Sobic002G255300--Sobic009G163800 Sobic002G255300--Sobic003G346600 Sobic009G076400 Sobic009G076400 Sobic002G255300--Sobic009G076400 Sobic002G255300--Sobic007G178600 Sobic002G255300--Sobic004G331400 Sobic010G060500 Sobic010G060500 Sobic002G255300--Sobic010G060500 Sobic007G197800 Sobic007G197800 Sobic002G255300--Sobic007G197800 Sobic002G255300--Sobic009G050300 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic001G054900 Sobic001G054900 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic009G215200 Sobic009G215200 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic004G104100 Sobic004G104100 Sobic010G166100--Sobic004G104100 Sobic010G166100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic010G166100--Sobic002G047600 Sobic001G376600--Sobic004G331400 Sobic001G376600--Sobic009G105700 Sobic001G376600--Sobic010G206200 Sobic001G376600--Sobic001G091801 Sobic001G376600--Sobic002G175100 Sobic001G376600--Sobic009G050300 Sobic006G106100 Sobic006G106100 Sobic001G376600--Sobic006G106100 Sobic005G019700 Sobic005G019700 Sobic001G376600--Sobic005G019700 Sobic001G376600--Sobic006G221200 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic010G230700 Sobic010G230700 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700
Octagon: transcription factors


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