Gene annotation
Transcriptome id Sobic.004G271400.1
Synonym Sb04g030890
Functional annotation L11 domain containing ribosomal protein, putative, expressed
UniProt -
Pfam PF00298 PF03946
Panther DB PTHR11661 PTHR11661:SF6
NCBI CDD KOG0886; 40S ribosomal protein S2
KEGG Orthology K02870; RP-L12e, large subunit ribosomal protein L12e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G37190 : Ribosomal protein L11 family protein
RAP-DB (Rice) LOC_Os02g47140.2 : L11 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a011680 , Zm00025a009963 , Zm00025a032407 , Zm00025a021660 , Zm00025a012984 , Zm00025a041820
Brachypodium KQK00885 , KQJ84362
Barley HORVU2Hr1G102610.1 , HORVU6Hr1G067870.1
Wheat TraesCS6B02G295500
Populus PNT30353 , PNS94431 , PNS94403 , PNS94404


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cDNA sequences
Sobic.004G271400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
2 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
4 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
5 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
6 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
8 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
9 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
10 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
11 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
12 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
14 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
17 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
18 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
19 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
20 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e


Gene co-expression network
sample Sobic004G271400 Sobic004G271400 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic002G414700 Sobic002G414700 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic009G050300 Sobic009G050300 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic003G408100 Sobic003G408100 Sobic003G152600--Sobic003G408100 Sobic003G152600--Sobic001G054900 Sobic003G152600--Sobic004G271400 Sobic003G152600--Sobic004G331400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic010G206200 Sobic010G206200 Sobic003G152600--Sobic010G206200 Sobic001G374700 Sobic001G374700 Sobic003G152600--Sobic001G374700 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic003G322400--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic003G322400--Sobic007G184600 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic009G163800 Sobic009G163800 Sobic001G054900--Sobic009G163800 Sobic001G036900 Sobic001G036900 Sobic001G054900--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic007G018300 Sobic007G018300 Sobic005G019700--Sobic007G018300 Sobic009G054800 Sobic009G054800 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic007G197800 Sobic007G197800 Sobic005G019700--Sobic007G197800 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600
Octagon: transcription factors


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