Gene annotation
Transcriptome id Sobic.002G414700.1
Synonym Sb02g042710
Functional annotation 60S ribosomal protein L22-2, putative, expressed
UniProt C5X5I6
Pfam PF01776
Panther DB PTHR10064 PTHR10064:SF5
NCBI CDD KOG3434; 60S ribosomal protein L22
KEGG Orthology K02891; RP-L22e, large subunit ribosomal protein L22e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G05560 : Ribosomal L22e protein family
RAP-DB (Rice) LOC_Os07g47710.1 : 60S ribosomal protein L22-2, putative, expressed
MaizeGDB (Corn) Zm00025a015421 , Zm00025a052402 , Zm00025a049131
Brachypodium KQK21750 , KQK14678
Barley HORVU2Hr1G019160.1
Wheat TraesCS2A02G110500 , TraesCS2B02G129300 , TraesCS2D02G111100 , TraesCS7A02G344500
Populus -


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cDNA sequences
Sobic.002G414700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
2 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
3 Sobic.001G508900 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
4 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
5 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
6 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
7 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
8 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
9 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
10 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
11 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
12 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
13 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
14 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
15 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
16 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
17 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
19 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
20 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae


Gene co-expression network
sample Sobic002G414700 Sobic002G414700 Sobic004G271400 Sobic004G271400 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic009G050300 Sobic009G050300 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic002G200600 Sobic002G200600 Sobic001G402050--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic007G197800 Sobic007G197800 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic009G215200 Sobic009G215200 Sobic001G402050--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic001G508900--Sobic007G178600 Sobic001G508900--Sobic002G414700 Sobic001G508900--Sobic001G175300 Sobic010G251600 Sobic010G251600 Sobic001G508900--Sobic010G251600 Sobic003G436700 Sobic003G436700 Sobic001G508900--Sobic003G436700 Sobic010G206200 Sobic010G206200 Sobic001G508900--Sobic010G206200 Sobic001G508900--Sobic003G078200 Sobic001G508900--Sobic004G271400 Sobic001G508900--Sobic004G008400 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic007G184600--Sobic001G493001 Sobic001G177800 Sobic001G177800 Sobic007G184600--Sobic001G177800 Sobic007G184600--Sobic006G067800 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic002G286900 Sobic002G286900 Sobic001G175300--Sobic002G286900 Sobic009G242300 Sobic009G242300 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic006G047400 Sobic006G047400 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic001G493001--Sobic002G200600 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic010G070500 Sobic010G070500 Sobic004G055100--Sobic010G070500 Sobic004G055100--Sobic003G078200 Sobic004G055100--Sobic010G251600 Sobic004G055100--Sobic009G054800 Sobic004G055100--Sobic010G206200 Sobic004G055100--Sobic002G414700 Sobic004G055100--Sobic003G436700 Sobic001G226500 Sobic001G226500 Sobic004G055100--Sobic001G226500 Sobic004G055100--Sobic001G175300 Sobic006G067800--Sobic002G200600 Sobic006G067800--Sobic002G081600 Sobic006G067800--Sobic001G402050 Sobic006G067800--Sobic006G116700 Sobic006G067800--Sobic009G050300 Sobic006G067800--Sobic009G215200 Sobic006G067800--Sobic007G197800 Sobic006G067800--Sobic003G436700 Sobic006G067800--Sobic001G130301
Octagon: transcription factors


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