Gene annotation
Transcriptome id Sobic.001G508900.1
Synonym Sb01g047510
Functional annotation 60S ribosomal protein L21-2, putative, expressed
UniProt C5WYV4
Pfam PF01157
Panther DB PTHR20981
NCBI CDD KOG1732; 60S ribosomal protein L21
KEGG Orthology K02889; RP-L21e, large subunit ribosomal protein L21e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G57860 : Translation protein SH3-like family protein
RAP-DB (Rice) LOC_Os10g32820.1 : 60S ribosomal protein L21-2, putative, expressed
MaizeGDB (Corn) Zm00025a017679 , Zm00025a053273 , Zm00025a053396 , Zm00025a006672 , Zm00025a000569
Brachypodium PNT78232 , KQJ96997 , KQK23719
Barley HORVU4Hr1G084420.2 , HORVU1Hr1G038890.1
Wheat TraesCS5A02G513300 , TraesCS1B02G164500 , TraesCS1D02G145100 , TraesCS4B02G344400 , TraesCS4D02G339500 , TraesCS1A02G147000
Populus PNT45868 , PNT53143 , PNT53142 , PNT53141 , PNT53140


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cDNA sequences
Sobic.001G508900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
2 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
4 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
5 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
6 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
7 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
8 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
9 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
10 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
11 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
12 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
13 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
14 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
15 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
17 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
18 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
19 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
20 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e


Gene co-expression network
sample Sobic001G508900 Sobic001G508900 Sobic007G178600 Sobic007G178600 Sobic001G508900--Sobic007G178600 Sobic002G414700 Sobic002G414700 Sobic001G508900--Sobic002G414700 Sobic001G175300 Sobic001G175300 Sobic001G508900--Sobic001G175300 Sobic010G251600 Sobic010G251600 Sobic001G508900--Sobic010G251600 Sobic003G436700 Sobic003G436700 Sobic001G508900--Sobic003G436700 Sobic010G206200 Sobic010G206200 Sobic001G508900--Sobic010G206200 Sobic003G078200 Sobic003G078200 Sobic001G508900--Sobic003G078200 Sobic004G271400 Sobic004G271400 Sobic001G508900--Sobic004G271400 Sobic004G008400 Sobic004G008400 Sobic001G508900--Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic002G286900 Sobic002G286900 Sobic001G175300--Sobic002G286900 Sobic009G242300 Sobic009G242300 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic010G251600--Sobic010G206200 Sobic007G019400 Sobic007G019400 Sobic010G251600--Sobic007G019400 Sobic010G251600--Sobic003G436700 Sobic010G251600--Sobic007G178600 Sobic009G215200 Sobic009G215200 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic003G436700--Sobic010G251600 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic002G081600 Sobic002G081600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic010G206200--Sobic009G050300 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic004G271400--Sobic001G054900 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G271400--Sobic004G008400 Sobic004G271400--Sobic007G178600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500
Octagon: transcription factors


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