Gene annotation
Transcriptome id Sobic.007G178600.1
Synonym Sb07g025000
Functional annotation -
UniProt C5YH46
Pfam PF01090
Panther DB PTHR11710
NCBI CDD KOG3411; 40S ribosomal protein S19
KEGG Orthology K02966; RP-S19e, small subunit ribosomal protein S19e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G61170 : Ribosomal protein S19e family protein
RAP-DB (Rice) LOC_Os03g31090.1 : 40S ribosomal protein S19, putative, expressed
MaizeGDB (Corn) Zm00025a052194 , Zm00025a002889
Brachypodium -
Barley HORVU6Hr1G062080.1 , HORVU5Hr1G052240.10 , HORVU5Hr1G052240.11 , HORVU5Hr1G052240.9 , HORVU6Hr1G064520.1 , HORVU2Hr1G019060.1 , HORVU5Hr1G052240.2 , HORVU5Hr1G052240.3 , HORVU5Hr1G052240.1 , HORVU5Hr1G052240.6 , HORVU5Hr1G052240.7 , HORVU5Hr1G052240.4 , HORVU5Hr1G052240.5 , HORVU5Hr1G052240.8 , HORVU6Hr1G064520.2
Wheat TraesCS5D02G174600 , TraesCS5A02G170200 , TraesCS5A02G170200 , TraesCS5B02G167000 , TraesCS5B02G167000
Populus -


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cDNA sequences
Sobic.007G178600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
2 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
4 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
6 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
7 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
8 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
9 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
10 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
11 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
12 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
13 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
15 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
17 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
18 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
19 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
20 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic007G178600 Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic006G116700 Sobic006G116700 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic002G379500 Sobic002G379500 Sobic004G008400--Sobic002G379500 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic008G108601--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic008G108601--Sobic007G019400 Sobic010G206200 Sobic010G206200 Sobic008G108601--Sobic010G206200 Sobic002G049300 Sobic002G049300 Sobic008G108601--Sobic002G049300 Sobic001G226500 Sobic001G226500 Sobic008G108601--Sobic001G226500 Sobic004G104100 Sobic004G104100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic001G091801 Sobic001G091801 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic006G221200--Sobic005G019700 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601
Octagon: transcription factors


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