Gene annotation
Transcriptome id Sobic.002G049300.1
Synonym Sb02g004110
Functional annotation ribosomal protein S13p/S18e, putative, expressed
UniProt C5XAE4
Pfam PF00416
Panther DB PTHR10871 PTHR10871:SF6
NCBI CDD KOG3311; Ribosomal protein S18
KEGG Orthology K02964; RP-S18e, small subunit ribosomal protein S18e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G34030 : Ribosomal protein S13/S18 family
RAP-DB (Rice) LOC_Os07g07709.1 : ribosomal protein S13p/S18e, putative, expressed
MaizeGDB (Corn) Zm00025a016585 , Zm00025a008543
Brachypodium KQK12728 , KQK20675
Barley HORVU7Hr1G088070.1
Wheat TraesCS7B02G370800 , TraesCS3D02G236600 , TraesCS5A02G434200 , TraesCS2B02G539700 , TraesCS5D02G442100 , TraesCS7A02G469100 , TraesCS7A02G469100 , TraesCS7D02G456600 , TraesCS5B02G437200
Populus PNT37570


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cDNA sequences
Sobic.002G049300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
2 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
3 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
4 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
5 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
6 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
8 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
9 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
10 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
11 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
12 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
13 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
15 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
19 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae


Gene co-expression network
sample Sobic002G049300 Sobic002G049300 Sobic001G085400 Sobic001G085400 Sobic002G049300--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601 Sobic009G022400--Sobic002G049300 Sobic009G022400--Sobic007G178600 Sobic009G022400--Sobic001G085400 Sobic001G175300 Sobic001G175300 Sobic009G022400--Sobic001G175300 Sobic009G022400--Sobic006G221200 Sobic009G022400--Sobic009G163800 Sobic003G280700 Sobic003G280700 Sobic009G022400--Sobic003G280700 Sobic009G022400--Sobic008G108601 Sobic004G104100 Sobic004G104100 Sobic009G022400--Sobic004G104100 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic008G108601--Sobic002G047600 Sobic008G108601--Sobic007G019400 Sobic010G206200 Sobic010G206200 Sobic008G108601--Sobic010G206200 Sobic008G108601--Sobic002G049300 Sobic001G226500 Sobic001G226500 Sobic008G108601--Sobic001G226500 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic002G379500 Sobic002G379500 Sobic001G436200--Sobic002G379500 Sobic001G436200--Sobic002G047600 Sobic002G056200 Sobic002G056200 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic001G436200--Sobic006G137100 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic002G286900--Sobic006G137100 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic002G286900--Sobic001G226500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600
Octagon: transcription factors


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