Gene annotation
Transcriptome id Sobic.003G280700.1
Synonym Sb03g033230
Functional annotation 40S ribosomal protein S24, putative, expressed
UniProt C5XIE4
Pfam PF01282
Panther DB PTHR10496
NCBI CDD KOG3424; 40S ribosomal protein S24
KEGG Orthology K02974; RP-S24e, small subunit ribosomal protein S24e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G28060 : Ribosomal protein S24e family protein
RAP-DB (Rice) LOC_Os01g52490.1 : 40S ribosomal protein S24, putative, expressed
MaizeGDB (Corn) Zm00025a020117 , Zm00025a027742 , Zm00025a038994
Brachypodium KQK18011
Barley HORVU7Hr1G088580.1 , HORVU2Hr1G055560.1 , HORVU2Hr1G055560.3 , HORVU2Hr1G055560.2 , HORVU3Hr1G068610.2 , HORVU3Hr1G068610.3 , HORVU3Hr1G068610.1 , HORVU3Hr1G068610.4 , HORVU3Hr1G068610.5
Wheat TraesCS3B02G320300 , TraesCS6D02G177000 , TraesCS6D02G177000 , TraesCS3D02G285800 , TraesCS7A02G356300 , TraesCS3A02G286000 , TraesCS7B02G271400 , TraesCS7D02G366400 , TraesCS6B02G234000
Populus -


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cDNA sequences
Sobic.003G280700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
2 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
3 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
4 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
5 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
6 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
7 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
8 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
9 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
10 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
11 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
12 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
13 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
14 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
15 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
16 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
17 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
18 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
19 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
20 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e


Gene co-expression network
sample Sobic003G280700 Sobic003G280700 Sobic002G049300 Sobic002G049300 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic006G081100 Sobic006G081100 Sobic003G280700--Sobic006G081100 Sobic005G050500 Sobic005G050500 Sobic003G280700--Sobic005G050500 Sobic001G085400 Sobic001G085400 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic002G056200 Sobic002G056200 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic002G049300--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic001G011200--Sobic001G436200 Sobic002G374900 Sobic002G374900 Sobic001G011200--Sobic002G374900 Sobic001G091801 Sobic001G091801 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic001G011200--Sobic004G198400 Sobic001G011200--Sobic003G280700 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic006G081100--Sobic003G249700 Sobic006G081100--Sobic008G108601 Sobic005G019700 Sobic005G019700 Sobic006G081100--Sobic005G019700 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic006G081100--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic006G081100--Sobic009G050300 Sobic010G230700 Sobic010G230700 Sobic006G081100--Sobic010G230700 Sobic001G225700 Sobic001G225700 Sobic006G081100--Sobic001G225700 Sobic002G304900 Sobic002G304900 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic009G233400 Sobic009G233400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic001G039400 Sobic001G039400 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic001G334300 Sobic001G334300 Sobic005G050500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic004G198400--Sobic001G403500 Sobic002G379500 Sobic002G379500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic010G206200 Sobic010G206200 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic009G054800 Sobic009G054800 Sobic004G198400--Sobic009G054800 Sobic004G198400--Sobic006G221200 Sobic004G198400--Sobic006G137100 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic003G109600 Sobic003G109600 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic009G022400--Sobic002G049300 Sobic009G022400--Sobic007G178600 Sobic009G022400--Sobic001G085400 Sobic001G175300 Sobic001G175300 Sobic009G022400--Sobic001G175300 Sobic009G022400--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic009G022400--Sobic009G163800 Sobic009G022400--Sobic003G280700 Sobic009G022400--Sobic008G108601 Sobic004G104100 Sobic004G104100 Sobic009G022400--Sobic004G104100 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic007G197800 Sobic007G197800 Sobic001G403500--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic006G116700 Sobic006G116700 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200
Octagon: transcription factors


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