Gene annotation
Transcriptome id Sobic.010G069400.1
Synonym Sb10g006060, emb2386
Functional annotation 60S ribosomal protein L19-3, putative, expressed
UniProt C5Z5W5
Pfam PF01280
Panther DB PTHR10722
NCBI CDD KOG1696; 60s ribosomal protein L19
KEGG Orthology K02885; RP-L19e, large subunit ribosomal protein L19e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G16780 : Ribosomal protein L19e family protein
RAP-DB (Rice) LOC_Os03g38260.1 : 60S ribosomal protein L19-3, putative, expressed
MaizeGDB (Corn) Zm00025a019017 , Zm00025a049720
Brachypodium KQK14665
Barley HORVU2Hr1G018700.2 , HORVU2Hr1G018700.1
Wheat TraesCS2D02G092800 , TraesCS2B02G126500 , TraesCS2B02G109000 , TraesCS2D02G109000 , TraesCS2A02G108900 , TraesCS2A02G094200
Populus -


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cDNA sequences
Sobic.010G069400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
2 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
3 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
4 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
5 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
7 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
8 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
9 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
10 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
11 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
12 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
13 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
14 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
17 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
18 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
19 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
20 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e


Gene co-expression network
sample Sobic010G069400 Sobic010G069400 Sobic003G387900 Sobic003G387900 Sobic010G069400--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic010G069400--Sobic009G233400 Sobic001G039400 Sobic001G039400 Sobic010G069400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic010G069400--Sobic005G050500 Sobic002G304900 Sobic002G304900 Sobic010G069400--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic001G085400 Sobic001G085400 Sobic010G069400--Sobic001G085400 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic001G334300 Sobic001G334300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic009G050300 Sobic009G050300 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic004G349700--Sobic010G069400 Sobic004G349700--Sobic001G039400 Sobic004G349700--Sobic003G387900 Sobic004G349700--Sobic001G085400 Sobic004G349700--Sobic002G047600 Sobic004G349700--Sobic002G304900 Sobic004G349700--Sobic009G233400 Sobic002G115000 Sobic002G115000 Sobic004G349700--Sobic002G115000 Sobic004G349700--Sobic007G019400 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic001G403500 Sobic001G403500 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500
Octagon: transcription factors


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