Gene annotation
Transcriptome id Sobic.009G233400.1
Synonym Sb09g028590
Functional annotation 60S ribosomal protein L18a, putative, expressed
UniProt C5YVL1
Pfam PF01775
Panther DB PTHR10052 PTHR10052:SF10
NCBI CDD KOG0829; 60S ribosomal protein L18A
KEGG Orthology K02882; RP-L18Ae, large subunit ribosomal protein L18Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G34480 : Ribosomal protein L18ae/LX family protein
RAP-DB (Rice) LOC_Os05g49030.1 : 60S ribosomal protein L18a, putative, expressed
MaizeGDB (Corn) Zm00025a038757 , Zm00025a030911 , Zm00025a036615 , Zm00025a028127 , Zm00025a044581
Brachypodium KQK09754 , KQK09092 , KQK04859
Barley HORVU1Hr1G088040.3 , HORVU1Hr1G088040.2 , HORVU1Hr1G088040.1 , HORVU1Hr1G088040.4 , HORVU3Hr1G060800.2 , HORVU3Hr1G060800.1
Wheat TraesCS1A02G399800 , TraesCS3A02G247600 , TraesCS3D02G243800 , TraesCS1D02G407500 , TraesCS1B02G427900 , TraesCS3B02G271800
Populus -


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cDNA sequences
Sobic.009G233400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
2 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
3 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
4 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
5 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
6 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
7 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
8 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
9 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
10 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
11 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
13 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
14 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
15 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
16 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
17 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
18 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
19 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
20 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e


Gene co-expression network
sample Sobic009G233400 Sobic009G233400 Sobic001G334300 Sobic001G334300 Sobic009G233400--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic001G085400 Sobic001G085400 Sobic009G233400--Sobic001G085400 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic007G019400 Sobic007G019400 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic002G379500 Sobic002G379500 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500
Octagon: transcription factors


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