Gene annotation
Transcriptome id Sobic.008G135000.2,Sobic.008G135000.1
Synonym Sb08g018650
Functional annotation 60S ribosomal protein L8, putative, expressed
UniProt A0A1B6PDH0
Pfam PF00181 PF03947 PF03947
Panther DB PTHR13691 PTHR13691:SF16 PTHR13691 PTHR13691:SF18
NCBI CDD KOG2309; 60s ribosomal protein L2/L8
KEGG Orthology K02938; RP-L8e, large subunit ribosomal protein L8e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0005622intracellular GO:0006412translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G36130 : Ribosomal protein L2 family
RAP-DB (Rice) LOC_Os12g38000.1 : 60S ribosomal protein L8, putative, expressed
MaizeGDB (Corn) Zm00025a004222 , Zm00025a045719 , Zm00025a025418
Brachypodium KQJ86232
Barley HORVU4Hr1G077020.1 , HORVU5Hr1G021730.1 , HORVU5Hr1G021730.2 , HORVU5Hr1G021730.3
Wheat TraesCS4B02G297800 , TraesCS4A02G189200 , TraesCS4D02G123700 , TraesCS5A02G082800 , TraesCS4B02G128700 , TraesCS4A02G007200 , TraesCS5D02G095400 , TraesCS5B02G088900
Populus PNT26464 , PNT36243 , PNT26463


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cDNA sequences
Sobic.008G135000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
2 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
3 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
4 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
5 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
6 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
7 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
9 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
10 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
13 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
14 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
15 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
16 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
17 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
18 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
19 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
20 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -


Gene co-expression network
sample Sobic008G135000 Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic008G135000--Sobic001G058900 Sobic009G233400 Sobic009G233400 Sobic008G135000--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic008G135000--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic008G135000--Sobic002G115000 Sobic001G057300 Sobic001G057300 Sobic008G135000--Sobic001G057300 Sobic009G191200 Sobic009G191200 Sobic008G135000--Sobic009G191200 Sobic001G334300 Sobic001G334300 Sobic008G135000--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic008G135000--Sobic001G085400 Sobic010G069400 Sobic010G069400 Sobic008G135000--Sobic010G069400 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic003G387900 Sobic003G387900 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic002G115000--Sobic001G085400 Sobic007G019000 Sobic007G019000 Sobic002G115000--Sobic007G019000 Sobic002G115000--Sobic001G058900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic007G178600 Sobic007G178600 Sobic002G115000--Sobic007G178600 Sobic002G115000--Sobic002G049300 Sobic006G216600 Sobic006G216600 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic001G057300--Sobic008G135000 Sobic001G057300--Sobic001G058900 Sobic001G057300--Sobic001G334300 Sobic001G057300--Sobic001G085400 Sobic006G035900 Sobic006G035900 Sobic001G057300--Sobic006G035900 Sobic001G057300--Sobic002G115000 Sobic001G057300--Sobic003G387900 Sobic009G191200--Sobic009G233400 Sobic009G191200--Sobic008G135000 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic009G191200--Sobic002G115000 Sobic009G191200--Sobic002G049300 Sobic003G280700 Sobic003G280700 Sobic009G191200--Sobic003G280700 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic001G334300--Sobic002G049300 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400
Octagon: transcription factors


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