Gene annotation
Transcriptome id Sobic.006G201500.1
Synonym Sb06g027330
Functional annotation L11 domain containing ribosomal protein, putative, expressed
UniProt C5YF43
Pfam PF00298 PF03946
Panther DB PTHR11661 PTHR11661:SF6
NCBI CDD KOG0886; 40S ribosomal protein S2
KEGG Orthology K02870; RP-L12e, large subunit ribosomal protein L12e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G37190 : Ribosomal protein L11 family protein
RAP-DB (Rice) LOC_Os02g47140.2 : L11 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a011680 , Zm00025a009963 , Zm00025a032407 , Zm00025a021660 , Zm00025a012984 , Zm00025a041820
Brachypodium KQK00885 , KQJ84362
Barley HORVU2Hr1G102610.1 , HORVU6Hr1G067870.1
Wheat TraesCS6B02G295500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G201500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
2 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
3 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
4 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
5 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
7 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
8 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
9 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
10 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
11 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
12 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
13 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
14 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
15 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
16 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
18 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
19 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
20 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e


Gene co-expression network
sample Sobic006G201500 Sobic006G201500 Sobic002G115000 Sobic002G115000 Sobic006G201500--Sobic002G115000 Sobic001G085400 Sobic001G085400 Sobic006G201500--Sobic001G085400 Sobic009G233400 Sobic009G233400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic007G019000 Sobic007G019000 Sobic006G201500--Sobic007G019000 Sobic010G069400 Sobic010G069400 Sobic006G201500--Sobic010G069400 Sobic001G058900 Sobic001G058900 Sobic006G201500--Sobic001G058900 Sobic008G098800 Sobic008G098800 Sobic006G201500--Sobic008G098800 Sobic003G249700 Sobic003G249700 Sobic006G201500--Sobic003G249700 Sobic002G115000--Sobic001G085400 Sobic002G115000--Sobic007G019000 Sobic002G115000--Sobic001G058900 Sobic002G304900 Sobic002G304900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic002G115000--Sobic003G249700 Sobic002G115000--Sobic006G201500 Sobic007G178600 Sobic007G178600 Sobic002G115000--Sobic007G178600 Sobic002G049300 Sobic002G049300 Sobic002G115000--Sobic002G049300 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic001G334300 Sobic001G334300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic004G104100 Sobic004G104100 Sobic010G166100--Sobic004G104100 Sobic006G221200 Sobic006G221200 Sobic010G166100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic010G166100--Sobic001G085400 Sobic010G166100--Sobic002G047600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic007G019000--Sobic009G050300 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic008G098800--Sobic001G058900 Sobic008G098800--Sobic002G049300 Sobic008G098800--Sobic009G233400 Sobic008G098800--Sobic010G069400 Sobic008G098800--Sobic006G201500 Sobic008G098800--Sobic002G304900 Sobic001G377800 Sobic001G377800 Sobic008G098800--Sobic001G377800 Sobic008G098800--Sobic005G050500 Sobic003G280700 Sobic003G280700 Sobic008G098800--Sobic003G280700 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.