Gene annotation
Transcriptome id Sobic.010G076400.1
Synonym Sb10g006620
Functional annotation 40S ribosomal protein S17, putative, expressed
UniProt C5Z622
Pfam PF00833
Panther DB PTHR10732
NCBI CDD KOG0187; 40S ribosomal protein S17
KEGG Orthology K02962; RP-S17e, small subunit ribosomal protein S17e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G04800 : Ribosomal S17 family protein
RAP-DB (Rice) LOC_Os10g27190.1 : 40S ribosomal protein S17, putative, expressed
MaizeGDB (Corn) Zm00025a049641 , Zm00025a042448
Brachypodium KQJ97147
Barley HORVU1Hr1G042220.1
Wheat TraesCS1D02G156400
Populus -


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cDNA sequences
Sobic.010G076400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
2 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
3 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
4 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
5 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
6 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
8 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
9 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
10 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
11 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
12 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
13 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
14 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
15 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
18 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
19 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
20 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e


Gene co-expression network
sample Sobic010G076400 Sobic010G076400 Sobic002G372400 Sobic002G372400 Sobic010G076400--Sobic002G372400 Sobic009G223300 Sobic009G223300 Sobic010G076400--Sobic009G223300 Sobic003G078200 Sobic003G078200 Sobic010G076400--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic010G076400--Sobic009G054800 Sobic009G173500 Sobic009G173500 Sobic010G076400--Sobic009G173500 Sobic009G233400 Sobic009G233400 Sobic010G076400--Sobic009G233400 Sobic003G109600 Sobic003G109600 Sobic010G076400--Sobic003G109600 Sobic004G198400 Sobic004G198400 Sobic010G076400--Sobic004G198400 Sobic002G379500 Sobic002G379500 Sobic010G076400--Sobic002G379500 Sobic002G372400--Sobic003G078200 Sobic002G372400--Sobic009G054800 Sobic002G372400--Sobic010G076400 Sobic010G230700 Sobic010G230700 Sobic002G372400--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic002G372400--Sobic007G018300 Sobic005G019700 Sobic005G019700 Sobic002G372400--Sobic005G019700 Sobic002G372400--Sobic009G223300 Sobic009G050300 Sobic009G050300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400 Sobic009G223300--Sobic003G109600 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic009G223300--Sobic007G018300 Sobic009G223300--Sobic010G230700 Sobic009G223300--Sobic010G076400 Sobic009G223300--Sobic004G198400 Sobic009G223300--Sobic009G233400 Sobic001G039400 Sobic001G039400 Sobic009G223300--Sobic001G039400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic009G054800--Sobic002G372400 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic009G173500--Sobic001G039400 Sobic001G226500 Sobic001G226500 Sobic009G173500--Sobic001G226500 Sobic009G173500--Sobic009G233400 Sobic009G173500--Sobic009G223300 Sobic009G173500--Sobic003G109600 Sobic009G173500--Sobic003G078200 Sobic003G249700 Sobic003G249700 Sobic009G173500--Sobic003G249700 Sobic009G179100 Sobic009G179100 Sobic009G173500--Sobic009G179100 Sobic010G070500 Sobic010G070500 Sobic009G173500--Sobic010G070500 Sobic001G334300 Sobic001G334300 Sobic009G233400--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic009G233400--Sobic003G109600 Sobic001G085400 Sobic001G085400 Sobic009G233400--Sobic001G085400 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400
Octagon: transcription factors


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