Gene annotation
Transcriptome id Sobic.002G372400.1
Synonym Sb02g039090
Functional annotation 60S ribosomal protein, putative, expressed
UniProt C5XDZ7
Pfam PF00828
Panther DB PTHR11721 PTHR11721:SF5
NCBI CDD KOG1742; 60s ribosomal protein L15/L27
KEGG Orthology K02900; RP-L27Ae, large subunit ribosomal protein L27Ae
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70600 : Ribosomal protein L18e/L15 superfamily protein
RAP-DB (Rice) LOC_Os03g29460.1 : 60S ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a015192 , Zm00025a048738
Brachypodium KQK21319 , KQK15281
Barley -
Wheat -
Populus PNT25476 , PNT32678 , PNT14717


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cDNA sequences
Sobic.002G372400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
2 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
3 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
4 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
5 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
6 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
7 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
8 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
10 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
12 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
13 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
14 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
15 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
16 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
17 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
19 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic002G372400 Sobic002G372400 Sobic003G078200 Sobic003G078200 Sobic002G372400--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic010G230700 Sobic010G230700 Sobic002G372400--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic002G372400--Sobic007G018300 Sobic005G019700 Sobic005G019700 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic009G050300 Sobic009G050300 Sobic002G372400--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic002G372400--Sobic004G198400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic009G054800--Sobic002G372400 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic010G076400--Sobic002G372400 Sobic010G076400--Sobic009G223300 Sobic010G076400--Sobic003G078200 Sobic010G076400--Sobic009G054800 Sobic009G173500 Sobic009G173500 Sobic010G076400--Sobic009G173500 Sobic009G233400 Sobic009G233400 Sobic010G076400--Sobic009G233400 Sobic003G109600 Sobic003G109600 Sobic010G076400--Sobic003G109600 Sobic010G076400--Sobic004G198400 Sobic002G379500 Sobic002G379500 Sobic010G076400--Sobic002G379500 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic004G104100 Sobic004G104100 Sobic010G230700--Sobic004G104100 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic010G230700--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic010G230700--Sobic007G019000 Sobic010G230700--Sobic002G372400 Sobic007G018300--Sobic010G230700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic001G054900 Sobic001G054900 Sobic007G018300--Sobic001G054900 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200 Sobic009G223300--Sobic003G109600 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic009G223300--Sobic007G018300 Sobic009G223300--Sobic010G230700 Sobic009G223300--Sobic010G076400 Sobic009G223300--Sobic004G198400 Sobic009G223300--Sobic009G233400 Sobic001G039400 Sobic001G039400 Sobic009G223300--Sobic001G039400 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100
Octagon: transcription factors


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