Gene annotation
Transcriptome id Sobic.009G054800.1
Synonym UBQ6, Sb09g004630
Functional annotation 40S ribosomal protein S27a, putative, expressed
UniProt C5Z0N6
Pfam PF11976 PF01599
Panther DB PTHR10666
NCBI CDD KOG0004; Ubiquitin/40S ribosomal protein S27a fusion
KEGG Orthology K02977; RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G23410 : Ribosomal protein S27a / Ubiquitin family protein
RAP-DB (Rice) LOC_Os05g06770.1 : 40S ribosomal protein S27a, putative, expressed
MaizeGDB (Corn) Zm00025a042947 , Zm00025a042035 , Zm00025a005173 , Zm00025a050018 , Zm00025a037444 , Zm00025a036147 , Zm00025a039850 , Zm00025a047018 , Zm00025a013490
Brachypodium KQJ91591 , KQJ93465 , KQK17173 , KQK04204 , KQK04203 , KQK17147 , PNT77708 , KQK04197 , KQJ90267 , KQK17095 , KQK07353 , KQJ89932 , KQJ93464 , KQJ93343 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU7Hr1G113500.1 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU6Hr1G026260.9 , HORVU7Hr1G102840.9 , HORVU6Hr1G026260.2 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.1 , HORVU7Hr1G103550.3 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.5 , HORVU7Hr1G102840.6 , HORVU6Hr1G026260.8 , HORVU7Hr1G102840.1 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.4 , HORVU6Hr1G026260.5 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU7Hr1G102840.8 , HORVU6Hr1G026260.1 , HORVU6Hr1G026200.9 , HORVU6Hr1G026260.3 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU4Hr1G040980.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU0Hr1G025670.6 , HORVU0Hr1G025670.7 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU6Hr1G076980.1 , HORVU2Hr1G048820.1 , HORVU1Hr1G082070.1 , HORVU2Hr1G048830.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8 , HORVU6Hr1G016200.1
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7A02G453300 , TraesCS6A02G136700 , TraesCS6B02G148000 , TraesCS7A02G466500 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS5D02G087500 , TraesCS2A02G458000 , TraesCS6A02G087800 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS5B02G080200 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS4B02G218100 , TraesCS2D02G580700 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS4D02G218300 , TraesCS2D02G458700 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS7A02G453600 , TraesCS6D02G137400 , TraesCS6A02G112400 , TraesCS6B02G140600 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCSU02G019400 , TraesCS5A02G073800 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300
Populus PNT59589 , PNT59588 , PNS95081 , PNS95082 , PNS95078 , PNS95079 , PNS95075 , PNS95076 , PNS95077 , PNT13284 , PNT13285 , PNT13286 , PNT13287 , PNT13281 , PNT13282 , PNT13283 , PNT13288 , PNT13289 , PNT13292 , PNT13291 , PNT13290 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59593 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.009G054800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
2 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
3 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
4 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
5 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
6 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
7 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
9 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
10 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
11 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
12 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
13 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
16 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
17 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
18 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
19 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
20 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e


Gene co-expression network
sample Sobic009G054800 Sobic009G054800 Sobic003G078200 Sobic003G078200 Sobic009G054800--Sobic003G078200 Sobic010G206200 Sobic010G206200 Sobic009G054800--Sobic010G206200 Sobic002G372400 Sobic002G372400 Sobic009G054800--Sobic002G372400 Sobic005G019700 Sobic005G019700 Sobic009G054800--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic009G054800--Sobic007G197800 Sobic010G230700 Sobic010G230700 Sobic009G054800--Sobic010G230700 Sobic009G050300 Sobic009G050300 Sobic009G054800--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic009G054800--Sobic004G198400 Sobic006G116700 Sobic006G116700 Sobic009G054800--Sobic006G116700 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700 Sobic010G206200--Sobic009G050300 Sobic010G206200--Sobic009G054800 Sobic001G054900 Sobic001G054900 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic009G215200 Sobic009G215200 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic002G372400--Sobic003G078200 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic002G372400--Sobic010G230700 Sobic002G372400--Sobic007G018300 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic001G091801 Sobic001G091801 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic004G008400 Sobic004G008400 Sobic007G197800--Sobic004G008400 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic004G104100 Sobic004G104100 Sobic010G230700--Sobic004G104100 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic010G230700--Sobic007G019000 Sobic010G230700--Sobic002G372400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900
Octagon: transcription factors


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