Gene annotation
Transcriptome id Sobic.004G198400.1
Synonym Sb04g024500
Functional annotation 60S ribosomal protein L6, putative, expressed
UniProt C5XWF4
Pfam PF01159
Panther DB PTHR10715 PTHR10715:SF3
NCBI CDD KOG1694; 60s ribosomal protein L6
KEGG Orthology K02934; RP-L6e, large subunit ribosomal protein L6e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G74050 : Ribosomal protein L6 family protein
RAP-DB (Rice) LOC_Os04g39700.1 : 60S ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a021350 , Zm00025a031792 , Zm00025a031791
Brachypodium KQK00111 , KQJ94156
Barley HORVU6Hr1G041750.3 , HORVU6Hr1G041750.2 , HORVU6Hr1G041750.1
Wheat TraesCS6A02G204900 , TraesCS6B02G225600 , TraesCS6D02G190100 , TraesCS6B02G230300 , TraesCS6B02G230300
Populus -


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cDNA sequences
Sobic.004G198400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
2 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
3 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
4 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
5 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
6 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
7 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
8 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
9 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
10 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
12 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
13 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
14 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
15 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
16 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
18 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
19 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae


Gene co-expression network
sample Sobic004G198400 Sobic004G198400 Sobic001G403500 Sobic001G403500 Sobic004G198400--Sobic001G403500 Sobic002G379500 Sobic002G379500 Sobic004G198400--Sobic002G379500 Sobic009G050300 Sobic009G050300 Sobic004G198400--Sobic009G050300 Sobic010G206200 Sobic010G206200 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic009G054800 Sobic009G054800 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic007G197800 Sobic007G197800 Sobic001G403500--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic006G116700 Sobic006G116700 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic010G206200--Sobic009G050300 Sobic010G206200--Sobic009G054800 Sobic001G054900 Sobic001G054900 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic004G280700--Sobic004G198400 Sobic001G091801 Sobic001G091801 Sobic004G280700--Sobic001G091801 Sobic004G280700--Sobic009G215200 Sobic009G166500 Sobic009G166500 Sobic004G280700--Sobic009G166500 Sobic004G280700--Sobic006G213000 Sobic004G280700--Sobic009G050300 Sobic006G047400 Sobic006G047400 Sobic004G280700--Sobic006G047400 Sobic004G280700--Sobic006G116700 Sobic004G280700--Sobic010G206200 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic003G387900 Sobic003G387900 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic002G372400 Sobic002G372400 Sobic009G054800--Sobic002G372400 Sobic005G019700 Sobic005G019700 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic010G230700 Sobic010G230700 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic004G104100 Sobic004G104100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600
Octagon: transcription factors


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