Gene annotation
Transcriptome id Sobic.006G137100.2,Sobic.006G137100.1
Synonym RPL23AA, RPL23A, ATRPL23A, Sb06g021660
Functional annotation 60S ribosomal protein L23A, putative, expressed
UniProt A0A1B6PLV2 , A0A1B6PLV6
Pfam PF00276 PF03939
Panther DB PTHR11620 PTHR11620:SF14
NCBI CDD KOG1751; 60s ribosomal protein L23
KEGG Orthology K02893; RP-L23Ae, large subunit ribosomal protein L23Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G55280 : ribosomal protein L23AB
RAP-DB (Rice) LOC_Os01g24690.1 : 60S ribosomal protein L23A, putative, expressed
MaizeGDB (Corn) Zm00025a056406 , Zm00025a042867 , Zm00025a010789
Brachypodium KQJ83397 , KQK12825 , KQK12826 , KQJ83398
Barley HORVU2Hr1G086360.3 , HORVU2Hr1G086360.2 , HORVU2Hr1G086360.1 , HORVU2Hr1G086360.4 , HORVU2Hr1G086390.1
Wheat TraesCS2D02G354800 , TraesCS2B02G375100 , TraesCS2D02G354800
Populus PNT19221 , PNT19222 , PNT19223


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cDNA sequences
Sobic.006G137100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
2 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
3 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
4 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
6 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
7 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
8 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
9 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
10 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
12 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
13 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
16 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
17 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
18 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
19 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic006G137100 Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic006G137100--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic009G050300 Sobic009G050300 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic004G008400 Sobic004G008400 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic002G379500 Sobic002G379500 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic007G019400 Sobic007G019400 Sobic006G213000--Sobic007G019400 Sobic002G081600 Sobic002G081600 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic003G109600 Sobic003G109600 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic006G116700 Sobic006G116700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic001G403500--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic001G403500--Sobic004G198400 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic001G403500--Sobic010G206200 Sobic010G060500--Sobic003G346600 Sobic010G060500--Sobic006G137100 Sobic010G060500--Sobic004G008400 Sobic010G060500--Sobic009G166500 Sobic010G060500--Sobic009G050300 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic010G060500--Sobic006G213000 Sobic010G060500--Sobic009G163800 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601
Octagon: transcription factors


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