Gene annotation
Transcriptome id Sobic.002G056200.1
Synonym Sb02g004720
Functional annotation 40S ribosomal protein S15, putative, expressed
UniProt C5XB53
Pfam PF00203
Panther DB PTHR11880 PTHR11880:SF10
NCBI CDD KOG0898; 40S ribosomal protein S15
KEGG Orthology K02958; RP-S15e, small subunit ribosomal protein S15e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G09500 : Ribosomal protein S19 family protein
RAP-DB (Rice) LOC_Os07g08660.1 : 40S ribosomal protein S15, putative, expressed
MaizeGDB (Corn) Zm00025a045198 , Zm00025a016077 , Zm00025a016076
Brachypodium KQK12684 , KQK20550
Barley HORVU2Hr1G057430.1 , HORVU2Hr1G057430.3 , HORVU2Hr1G057430.2 , HORVU2Hr1G057430.5 , HORVU2Hr1G057430.4 , HORVU2Hr1G057430.7 , HORVU2Hr1G057430.6
Wheat TraesCS1B02G339400 , TraesCS5D02G451100 , TraesCS5D02G451100 , TraesCS2D02G246000 , TraesCS2A02G245900
Populus -


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cDNA sequences
Sobic.002G056200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
2 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
4 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
5 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
7 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
8 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
9 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
13 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
14 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
15 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
16 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
17 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
18 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
19 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic002G056200 Sobic002G056200 Sobic002G379500 Sobic002G379500 Sobic002G056200--Sobic002G379500 Sobic006G137100 Sobic006G137100 Sobic002G056200--Sobic006G137100 Sobic001G403500 Sobic001G403500 Sobic002G056200--Sobic001G403500 Sobic006G213000 Sobic006G213000 Sobic002G056200--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic002G056200--Sobic007G019400 Sobic003G387900 Sobic003G387900 Sobic002G056200--Sobic003G387900 Sobic003G109600 Sobic003G109600 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G047600 Sobic002G047600 Sobic002G056200--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic001G403500--Sobic002G081600 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic001G403500--Sobic010G206200 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic003G249700 Sobic003G249700 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic001G436200--Sobic002G379500 Sobic001G436200--Sobic002G047600 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic001G436200--Sobic006G137100 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601
Octagon: transcription factors


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