Gene annotation
Transcriptome id Sobic.003G109600.2
Synonym ATRPS5B, RPS5B, Sb03g009210
Functional annotation 40S ribosomal protein S5, putative, expressed
UniProt A0A1W0VWV3
Pfam PF00177
Panther DB PTHR11205 PTHR11205:SF24
NCBI CDD KOG3291; Ribosomal protein S7
KEGG Orthology K02989; RP-S5e, small subunit ribosomal protein S5e
Gene Ontology GO:0006412; translation


Orthologs (automatic annotation)
TAIR AT2G37270 : ribosomal protein 5B
RAP-DB (Rice) LOC_Os11g29190.2 : 40S ribosomal protein S5, putative, expressed
MaizeGDB (Corn) Zm00025a035381 , Zm00025a043357
Brachypodium KQK02798 , KQJ91993
Barley HORVU3Hr1G015190.1 , HORVU3Hr1G015190.3 , HORVU3Hr1G015190.2 , HORVU3Hr1G015190.4
Wheat TraesCS3D02G085600 , TraesCS3A02G085600 , TraesCS3B02G100800
Populus PNT32588


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cDNA sequences
Sobic.003G109600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
2 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
3 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
4 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
5 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
7 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
8 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
9 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
12 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
13 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
14 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
17 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
18 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
19 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic003G109600 Sobic003G109600 Sobic002G379500 Sobic002G379500 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G249700 Sobic003G249700 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic009G050300 Sobic009G050300 Sobic002G379500--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic009G223300--Sobic003G109600 Sobic002G372400 Sobic002G372400 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic007G018300 Sobic007G018300 Sobic009G223300--Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic009G223300--Sobic010G230700 Sobic010G076400 Sobic010G076400 Sobic009G223300--Sobic010G076400 Sobic009G223300--Sobic004G198400 Sobic009G233400 Sobic009G233400 Sobic009G223300--Sobic009G233400 Sobic009G223300--Sobic001G039400 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic001G403500--Sobic002G081600 Sobic006G137100 Sobic006G137100 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic001G403500--Sobic010G206200 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic010G069400 Sobic010G069400 Sobic001G039400--Sobic010G069400 Sobic002G304900 Sobic002G304900 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic005G050500 Sobic005G050500 Sobic001G039400--Sobic005G050500 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic003G436700--Sobic010G251600 Sobic006G067800 Sobic006G067800 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic003G436700--Sobic002G379500
Octagon: transcription factors


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