Gene annotation
Transcriptome id Sobic.001G016500.1
Synonym Sb01g001610
Functional annotation ribosomal protein L22, putative, expressed
UniProt C5WT04
Pfam PF00237
Panther DB PTHR11593
NCBI CDD KOG3353; 60S ribosomal protein L22
KEGG Orthology K02880; RP-L17e, large subunit ribosomal protein L17e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0015934large ribosomal subunit


Orthologs (automatic annotation)
TAIR AT1G27400 : Ribosomal protein L22p/L17e family protein
RAP-DB (Rice) LOC_Os09g08430.1 : ribosomal protein L22, putative, expressed
MaizeGDB (Corn) Zm00025a043131
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G016500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
3 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
4 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
5 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
6 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
7 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
8 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
9 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
10 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
11 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
12 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
14 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
15 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
17 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
18 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic001G016500 Sobic001G016500 Sobic009G050300 Sobic009G050300 Sobic001G016500--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic001G016500--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic001G016500--Sobic002G081600 Sobic002G379500 Sobic002G379500 Sobic001G016500--Sobic002G379500 Sobic003G346600 Sobic003G346600 Sobic001G016500--Sobic003G346600 Sobic001G018900 Sobic001G018900 Sobic001G016500--Sobic001G018900 Sobic001G016400 Sobic001G016400 Sobic001G016500--Sobic001G016400 Sobic004G008400 Sobic004G008400 Sobic001G016500--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic001G016500--Sobic007G197800 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic002G379500--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic001G016400--Sobic002G081600 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400
Octagon: transcription factors


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