Gene annotation
Transcriptome id Sobic.001G436200.1
Synonym Sb01g041040
Functional annotation S10/S20 domain containing ribosomal protein, putative, expressed
UniProt C5WQX5
Pfam PF00338
Panther DB PTHR11700:SF10 PTHR11700
NCBI CDD KOG0900; 40S ribosomal protein S20
KEGG Orthology K02969; RP-S20e, small subunit ribosomal protein S20e
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT5G62300 : Ribosomal protein S10p/S20e family protein
RAP-DB (Rice) LOC_Os03g14530.1 : S10/S20 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a052878 , Zm00025a001578
Brachypodium -
Barley HORVU7Hr1G028050.4 , HORVU7Hr1G028050.5 , HORVU7Hr1G028050.1 , HORVU7Hr1G028050.2 , HORVU7Hr1G028050.3
Wheat TraesCS4A02G417400 , TraesCS5A02G032000
Populus -


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cDNA sequences
Sobic.001G436200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
2 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
3 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
4 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
5 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
6 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
7 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
8 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
9 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
13 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
14 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
15 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
17 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
18 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
19 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
20 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e


Gene co-expression network
sample Sobic001G436200 Sobic001G436200 Sobic002G379500 Sobic002G379500 Sobic001G436200--Sobic002G379500 Sobic002G047600 Sobic002G047600 Sobic001G436200--Sobic002G047600 Sobic002G056200 Sobic002G056200 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic006G137100 Sobic006G137100 Sobic001G436200--Sobic006G137100 Sobic009G050300 Sobic009G050300 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic001G403500 Sobic001G403500 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic003G249700 Sobic003G249700 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic002G056200--Sobic002G379500 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic002G056200--Sobic007G019400 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic002G056200--Sobic001G436200 Sobic002G056200--Sobic002G047600 Sobic001G016400--Sobic009G050300 Sobic009G215200 Sobic009G215200 Sobic001G016400--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic002G081600 Sobic002G081600 Sobic001G016400--Sobic002G081600 Sobic002G374900--Sobic001G436200 Sobic001G091801 Sobic001G091801 Sobic002G374900--Sobic001G091801 Sobic002G374900--Sobic004G198400 Sobic002G374900--Sobic001G016400 Sobic001G011200 Sobic001G011200 Sobic002G374900--Sobic001G011200 Sobic002G374900--Sobic009G050300 Sobic007G019000 Sobic007G019000 Sobic002G374900--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G374900--Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic002G374900--Sobic004G104100 Sobic006G138100--Sobic001G436200 Sobic006G138100--Sobic002G047600 Sobic006G138100--Sobic002G379500 Sobic006G138100--Sobic007G019000 Sobic006G138100--Sobic006G137100 Sobic006G138100--Sobic004G008400 Sobic006G138100--Sobic003G109600 Sobic006G138100--Sobic009G050300 Sobic006G138100--Sobic006G116700 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500 Sobic001G016500--Sobic009G050300 Sobic001G016500--Sobic006G116700 Sobic001G016500--Sobic002G081600 Sobic001G016500--Sobic002G379500 Sobic003G346600 Sobic003G346600 Sobic001G016500--Sobic003G346600 Sobic001G016500--Sobic001G018900 Sobic001G016500--Sobic001G016400 Sobic001G016500--Sobic004G008400 Sobic001G016500--Sobic007G197800 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600
Octagon: transcription factors


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