Gene annotation
Transcriptome id Sobic.002G374900.1,Sobic.002G374900.2
Synonym Sb02g039260, P40, AP40, RP40, RPSAA
Functional annotation ribosomal protein S2, putative, expressed
UniProt A0A1B6QFI3 , A0A1B6QFI8
Pfam PF16122 PF00318
Panther DB PTHR11489
NCBI CDD KOG0830; 40S ribosomal protein SA (P40)/Laminin receptor 1
KEGG Orthology K02998; RP-SAe, small subunit ribosomal protein SAe
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0015935small ribosomal subunit


Orthologs (automatic annotation)
TAIR AT3G04770 : 40s ribosomal protein SA B
RAP-DB (Rice) LOC_Os07g42450.1 : ribosomal protein S2, putative, expressed
MaizeGDB (Corn) Zm00025a053370 , Zm00025a053261 , Zm00025a015219 , Zm00025a000466
Brachypodium KQK15577 , KQK15576 , KQK23288 , KQK15134
Barley HORVU7Hr1G091190.1 , HORVU6Hr1G022460.1 , HORVU4Hr1G077240.2 , HORVU4Hr1G077240.1
Wheat TraesCS4B02G299100 , TraesCS2A02G168300 , TraesCS4A02G006000 , TraesCS2D02G175700 , TraesCS2B02G194400 , TraesCS4D02G298000
Populus -


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cDNA sequences
Sobic.002G374900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
2 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
3 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
4 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
5 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
6 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
8 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
10 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
12 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
13 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
14 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
15 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
16 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
17 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
20 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e


Gene co-expression network
sample Sobic002G374900 Sobic002G374900 Sobic001G436200 Sobic001G436200 Sobic002G374900--Sobic001G436200 Sobic001G091801 Sobic001G091801 Sobic002G374900--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic002G374900--Sobic004G198400 Sobic001G016400 Sobic001G016400 Sobic002G374900--Sobic001G016400 Sobic001G011200 Sobic001G011200 Sobic002G374900--Sobic001G011200 Sobic009G050300 Sobic009G050300 Sobic002G374900--Sobic009G050300 Sobic007G019000 Sobic007G019000 Sobic002G374900--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G374900--Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic002G374900--Sobic004G104100 Sobic002G379500 Sobic002G379500 Sobic001G436200--Sobic002G379500 Sobic002G047600 Sobic002G047600 Sobic001G436200--Sobic002G047600 Sobic002G056200 Sobic002G056200 Sobic001G436200--Sobic002G056200 Sobic001G436200--Sobic001G016400 Sobic001G436200--Sobic002G374900 Sobic006G138100 Sobic006G138100 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic006G137100 Sobic006G137100 Sobic001G436200--Sobic006G137100 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic001G403500 Sobic001G403500 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic010G206200 Sobic010G206200 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic004G198400--Sobic006G213000 Sobic009G054800 Sobic009G054800 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic004G198400--Sobic006G137100 Sobic001G016400--Sobic009G050300 Sobic009G215200 Sobic009G215200 Sobic001G016400--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic001G016400--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G016400--Sobic006G116700 Sobic007G197800 Sobic007G197800 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic002G081600 Sobic002G081600 Sobic001G016400--Sobic002G081600 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G011200--Sobic001G016400 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic010G166100--Sobic004G104100 Sobic010G166100--Sobic006G221200 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic010G166100--Sobic007G019000 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic010G166100--Sobic002G047600 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300
Octagon: transcription factors


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