Gene annotation
Transcriptome id Sobic.006G081100.1
Synonym Sb06g016800
Functional annotation 40S ribosomal protein S10, putative, expressed
UniProt C5YGH8
Pfam PF03501
Panther DB PTHR12146 PTHR12146:SF7
NCBI CDD KOG3344; 40s ribosomal protein s10
KEGG Orthology K02947; RP-S10e, small subunit ribosomal protein S10e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25740 : RNA binding Plectin/S10 domain-containing protein
RAP-DB (Rice) LOC_Os04g35090.1 : 40S ribosomal protein S10, putative, expressed
MaizeGDB (Corn) Zm00025a011390 , Zm00025a056064 , Zm00025a039071 , Zm00025a025894
Brachypodium KQJ82637 , KQK11673 , KQJ99398
Barley HORVU3Hr1G111760.5 , HORVU3Hr1G111760.4 , HORVU3Hr1G111760.7 , HORVU3Hr1G111760.6 , HORVU3Hr1G111760.3 , HORVU3Hr1G111760.2 , HORVU0Hr1G004700.1 , HORVU0Hr1G004700.3 , HORVU0Hr1G004700.2 , HORVU0Hr1G004700.5 , HORVU0Hr1G004700.4 , HORVU0Hr1G004700.7
Wheat TraesCS2D02G301300 , TraesCS2B02G318500 , TraesCS2A02G302600 , TraesCS2B02G318500 , TraesCS2B02G318500
Populus -


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cDNA sequences
Sobic.006G081100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
2 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
3 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
4 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
6 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
7 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
9 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
10 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
12 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
13 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
17 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
18 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
19 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
20 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae


Gene co-expression network
sample Sobic006G081100 Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic006G081100--Sobic003G249700 Sobic008G108601 Sobic008G108601 Sobic006G081100--Sobic008G108601 Sobic005G019700 Sobic005G019700 Sobic006G081100--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic002G047600 Sobic002G047600 Sobic006G081100--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic006G081100--Sobic009G050300 Sobic010G230700 Sobic010G230700 Sobic006G081100--Sobic010G230700 Sobic001G225700 Sobic001G225700 Sobic006G081100--Sobic001G225700 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic002G286900 Sobic002G286900 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic008G108601--Sobic002G047600 Sobic008G108601--Sobic007G019400 Sobic010G206200 Sobic010G206200 Sobic008G108601--Sobic010G206200 Sobic002G049300 Sobic002G049300 Sobic008G108601--Sobic002G049300 Sobic008G108601--Sobic001G226500 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic007G018300 Sobic007G018300 Sobic005G019700--Sobic007G018300 Sobic009G054800 Sobic009G054800 Sobic005G019700--Sobic009G054800 Sobic006G116700 Sobic006G116700 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic007G197800 Sobic007G197800 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic002G047600--Sobic007G019400 Sobic006G137100 Sobic006G137100 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic001G225700--Sobic003G249700 Sobic001G225700--Sobic006G081100 Sobic001G225700--Sobic008G108601 Sobic001G225700--Sobic007G178600 Sobic001G225700--Sobic002G047600 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic002G115000 Sobic002G115000 Sobic001G225700--Sobic002G115000
Octagon: transcription factors


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