Gene annotation
Transcriptome id Sobic.001G377800.2
Synonym Sb01g035860
Functional annotation 60S ribosomal protein L18-3, putative, expressed
UniProt A0A1Z5S9X6
Pfam -
Panther DB PTHR10934 PTHR10934:SF3
NCBI CDD KOG1714; 60s ribosomal protein L18
KEGG Orthology K02883; RP-L18e, large subunit ribosomal protein L18e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G27850 : Ribosomal protein L18e/L15 superfamily protein
RAP-DB (Rice) LOC_Os03g22180.1 : 60S ribosomal protein L18-3, putative, expressed
MaizeGDB (Corn) Zm00025a049132 , Zm00025a043004
Brachypodium KQK07400 , KQK07401 , KQK14671 , PNT77445 , KQK21763
Barley HORVU1Hr1G022570.3 , HORVU1Hr1G022570.2 , HORVU1Hr1G022570.1 , HORVU2Hr1G018840.1 , HORVU2Hr1G018840.3 , HORVU2Hr1G018840.2 , HORVU2Hr1G018840.5 , HORVU2Hr1G018820.2 , HORVU2Hr1G018820.1 , HORVU2Hr1G018840.6 , HORVU2Hr1G018820.3 , HORVU2Hr1G018840.4
Wheat TraesCS4B02G166800 , TraesCS1B02G127200 , TraesCS4D02G169400 , TraesCS2D02G110100 , TraesCS2A02G109900 , TraesCS1A02G096500 , TraesCS1A02G096500 , TraesCS2B02G127900 , TraesCS1D02G105500 , TraesCS1D02G105500
Populus PNT04494 , PNT04496


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cDNA sequences
Sobic.001G377800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
2 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
4 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
7 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
8 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
11 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
12 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
13 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
14 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
16 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
17 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
18 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
19 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
20 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic001G377800 Sobic001G377800 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic004G104100--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic004G104100--Sobic010G230700 Sobic010G166100 Sobic010G166100 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic005G019700 Sobic005G019700 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic003G249700 Sobic003G249700 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic001G085400--Sobic002G406500 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic006G081100--Sobic003G249700 Sobic008G108601 Sobic008G108601 Sobic006G081100--Sobic008G108601 Sobic006G081100--Sobic005G019700 Sobic006G081100--Sobic001G091801 Sobic006G081100--Sobic006G221200 Sobic006G081100--Sobic002G047600 Sobic006G081100--Sobic009G050300 Sobic006G081100--Sobic010G230700 Sobic001G225700 Sobic001G225700 Sobic006G081100--Sobic001G225700 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic006G116700 Sobic006G116700 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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