Gene annotation
Transcriptome id Sobic.002G115000.1
Synonym Sb02g009810
Functional annotation 60S ribosomal protein L8, putative, expressed
UniProt C5X4C8
Pfam PF03947 PF00181
Panther DB PTHR13691:SF16 PTHR13691
NCBI CDD KOG2309; 60s ribosomal protein L2/L8
KEGG Orthology K02938; RP-L8e, large subunit ribosomal protein L8e
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT4G36130 : Ribosomal protein L2 family
RAP-DB (Rice) LOC_Os12g38000.1 : 60S ribosomal protein L8, putative, expressed
MaizeGDB (Corn) Zm00025a004222 , Zm00025a045719 , Zm00025a025418
Brachypodium KQJ86232
Barley HORVU5Hr1G021730.1 , HORVU5Hr1G021730.2 , HORVU5Hr1G021730.3
Wheat TraesCS4B02G128700 , TraesCS4A02G189200 , TraesCS4D02G123700 , TraesCS5A02G082800 , TraesCS5D02G095400 , TraesCS5B02G088900
Populus PNT26464 , PNT36243 , PNT26463


JBrowse

Open New Page


cDNA sequences
Sobic.002G115000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
2 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
4 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
5 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
8 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
9 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
10 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
11 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
12 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
13 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
16 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
18 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
19 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
20 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e


Gene co-expression network
sample Sobic002G115000 Sobic002G115000 Sobic001G085400 Sobic001G085400 Sobic002G115000--Sobic001G085400 Sobic007G019000 Sobic007G019000 Sobic002G115000--Sobic007G019000 Sobic001G058900 Sobic001G058900 Sobic002G115000--Sobic001G058900 Sobic002G304900 Sobic002G304900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic003G249700 Sobic003G249700 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic007G178600 Sobic007G178600 Sobic002G115000--Sobic007G178600 Sobic002G049300 Sobic002G049300 Sobic002G115000--Sobic002G049300 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic009G233400 Sobic009G233400 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic010G069400 Sobic010G069400 Sobic002G304900--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic002G304900--Sobic001G039400 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic006G137100 Sobic006G137100 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic006G201500--Sobic002G115000 Sobic006G201500--Sobic001G085400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic006G201500--Sobic007G019000 Sobic006G201500--Sobic010G069400 Sobic006G201500--Sobic001G058900 Sobic006G201500--Sobic008G098800 Sobic006G201500--Sobic003G249700 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.